Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83542 | Canola | extracellular, plasma membrane, vacuole | 76.42 | 76.74 |
| Bra025154.1-P | Field mustard | extracellular, plasma membrane, vacuole | 76.42 | 76.58 |
| CDY13577 | Canola | vacuole | 76.42 | 76.58 |
| AT1G13230.1 | Thale cress | extracellular | 63.37 | 70.99 |
| AT1G68780.1 | Thale cress | extracellular, golgi | 49.68 | 54.63 |
| GSMUA_Achr8P03860_001 | Banana | cytosol | 40.63 | 54.21 |
| KRH70637 | Soybean | extracellular, golgi | 52.0 | 53.0 |
| KRH75532 | Soybean | extracellular, plasma membrane | 51.58 | 52.69 |
| VIT_01s0011g02800.t01 | Wine grape | extracellular | 53.05 | 52.17 |
| KRG92006 | Soybean | extracellular, plasma membrane | 52.21 | 51.99 |
| PGSC0003DMT400002145 | Potato | extracellular | 50.11 | 50.96 |
| KRH34777 | Soybean | extracellular, vacuole | 51.16 | 50.73 |
| Solyc05g009990.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 48.0 | 48.61 |
| PGSC0003DMT400010384 | Potato | cytosol | 44.63 | 46.59 |
| Solyc06g069290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 45.26 | 46.24 |
| GSMUA_AchrUn_... | Banana | cytosol | 36.0 | 46.22 |
| GSMUA_Achr9P00780_001 | Banana | cytosol | 43.37 | 46.19 |
| GSMUA_Achr10P... | Banana | cytosol | 35.58 | 45.8 |
| KRH03836 | Soybean | extracellular, plasma membrane, vacuole | 44.42 | 44.51 |
| KRH56709 | Soybean | extracellular, plasma membrane | 43.58 | 43.4 |
| Os01t0110800-01 | Rice | plasma membrane | 40.84 | 43.11 |
| TraesCS3D01G072300.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 42.53 | 41.91 |
| TraesCS3D01G072400.2 | Wheat | extracellular, plasma membrane | 42.53 | 41.39 |
| HORVU3Hr1G013160.4 | Barley | vacuole | 42.11 | 41.15 |
| TraesCS3B01G086700.2 | Wheat | extracellular, plasma membrane, vacuole | 42.32 | 41.02 |
| TraesCS3A01G072700.2 | Wheat | extracellular | 41.68 | 40.41 |
| TraesCS3A01G072600.2 | Wheat | extracellular | 41.47 | 40.12 |
| KXG32099 | Sorghum | plasma membrane | 39.79 | 39.21 |
| KXG32097 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 39.37 | 39.12 |
| Zm00001d040130_P001 | Maize | mitochondrion | 41.05 | 36.72 |
| HORVU1Hr1G008420.1 | Barley | extracellular | 9.05 | 31.85 |
| AT4G28560.1 | Thale cress | extracellular, vacuole | 28.84 | 30.44 |
| AT2G42800.1 | Thale cress | vacuole | 27.79 | 28.57 |
| AT1G80080.1 | Thale cress | plasma membrane | 28.42 | 27.22 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:822155 | UniProt:A0A178V9D3 | ProteinID:AEE77049.1 | ArrayExpress:AT3G25670 |
| EnsemblPlantsGene:AT3G25670 | RefSeq:AT3G25670 | TAIR:AT3G25670 | RefSeq:AT3G25670-TAIR-G | EnsemblPlants:AT3G25670.1 | TAIR:AT3G25670.1 |
| UniProt:F4JA38 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | RefSeq:NP_189195.1 | ProteinID:OAP02900.1 | PFAM:PF13855 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007098 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020003 | PO:PO:0025022 |
| PRINTS:PR00019 | PANTHER:PTHR44325 | PANTHER:PTHR44325:SF1 | SUPFAM:SSF52058 | SignalP:SignalP-noTM | UniParc:UPI0000163543 |
| SEG:seg | : | : | : | : | : |
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4JA38]
Coordinates
chr3:-:9344313..9346424
Molecular Weight (calculated)
52738.4 Da
IEP (calculated)
4.996
GRAVY (calculated)
0.051
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWIHLVLFL CLTLLCCVTG ELSPEGTDDG APMEKTEQEA LYSAIQGFVG DSWNGSDLYP DPCGWTPIQG VSCDLYGDLW YVTDLTLGLV HENSLSCATS
101: LEIKPQLFKL KHLKSLTFFN CFTSPIRIPK EDWINLASNL ESLEFRSNPG LIGELPETIG SLTKLKSLVV LENGFNGKLP TRICNLTRLK RLVLAGNLFT
201: GTIPDCFNGF KDLLILDMSR NSFSGILPLS VGEMVSLLKL DLSNNQLEGR LPQEIGFLKN LTLLDLRNNR ISGGLFENIE KIPSLTDLVL SGNPMGSDDM
301: MGIKWENMGN LVILDLSKMG LRGEVPLGLT SLRRLRFLGL NDNNLTGTVP SKELETLPCL GALYINGNNL SGELRFSRKF YEKMGTRFKA SKNPNLCQDV
401: VSESRQYVVG LKSCMMEKAE DSLVIKQTWS NLKKEDESSS SMGVMVTRHV LLSNGFMWDL LLELSLILLL NLLVC
101: LEIKPQLFKL KHLKSLTFFN CFTSPIRIPK EDWINLASNL ESLEFRSNPG LIGELPETIG SLTKLKSLVV LENGFNGKLP TRICNLTRLK RLVLAGNLFT
201: GTIPDCFNGF KDLLILDMSR NSFSGILPLS VGEMVSLLKL DLSNNQLEGR LPQEIGFLKN LTLLDLRNNR ISGGLFENIE KIPSLTDLVL SGNPMGSDDM
301: MGIKWENMGN LVILDLSKMG LRGEVPLGLT SLRRLRFLGL NDNNLTGTVP SKELETLPCL GALYINGNNL SGELRFSRKF YEKMGTRFKA SKNPNLCQDV
401: VSESRQYVVG LKSCMMEKAE DSLVIKQTWS NLKKEDESSS SMGVMVTRHV LLSNGFMWDL LLELSLILLL NLLVC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.