Factsheet for Solyc05g009990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002145	Potato	extracellular	86.14	86.51
KRH75532	Soybean	extracellular, plasma membrane	56.5	56.99
VIT_01s0011g02800.t01	Wine grape	extracellular	57.57	55.9
KRH70637	Soybean	extracellular, golgi	55.44	55.79
KRG92006	Soybean	extracellular, plasma membrane	55.65	54.72
KRH34777	Soybean	extracellular, vacuole	55.65	54.49
GSMUA_Achr8P03860_001	Banana	cytosol	41.15	54.21
AT1G13230.1	Thale cress	extracellular	48.83	54.01
CDY19386	Canola	cytosol	46.7	53.68
CDX97999	Canola	extracellular	47.76	53.33
AT1G68780.1	Thale cress	extracellular, golgi	48.61	52.78
Bra004336.1-P	Field mustard	extracellular, golgi	47.55	51.74
CDX95990	Canola	extracellular, vacuole	47.33	51.51
Solyc06g069290.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	50.96	51.4
CDY33598	Canola	extracellular, golgi	46.48	50.58
GSMUA_Achr9P00780_001	Banana	cytosol	47.33	49.78
GSMUA_Achr10P...	Banana	cytosol	37.95	48.24
AT3G25670.1	Thale cress	extracellular	48.61	48.0
GSMUA_AchrUn_...	Banana	cytosol	37.74	47.84
CDX83542	Canola	extracellular, plasma membrane, vacuole	47.76	47.36
Os01t0110800-01	Rice	plasma membrane	45.42	47.33
CDY20429	Canola	cytosol	14.5	47.22
CDY13577	Canola	vacuole	47.33	46.84
Bra025154.1-P	Field mustard	extracellular, plasma membrane, vacuole	47.33	46.84
KXG32099	Sorghum	plasma membrane	45.2	43.98
TraesCS3D01G072400.2	Wheat	extracellular, plasma membrane	45.42	43.65
KXG32097	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	44.35	43.51
TraesCS3D01G072300.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.35	43.15
HORVU3Hr1G013160.4	Barley	vacuole	44.56	43.0
Zm00001d040130_P001	Maize	mitochondrion	48.61	42.94
TraesCS3A01G072700.2	Wheat	extracellular	44.78	42.86
TraesCS3B01G086700.2	Wheat	extracellular, plasma membrane, vacuole	44.78	42.86
TraesCS3A01G072600.2	Wheat	extracellular	44.35	42.36
Solyc09g072630.2.1	Tomato	extracellular	29.85	32.33
Solyc10g007830.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	29.64	31.45
Solyc12g042760.1.1	Tomato	plasma membrane	31.98	31.32
HORVU1Hr1G008420.1	Barley	extracellular	8.32	28.89
Bra019819.1-P	Field mustard	nucleus	46.91	14.64

Protein Annotations

EnsemblPlants:Solyc05g009990.2.1	EnsemblPlantsGene:Solyc05g009990.2	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44325	PANTHER:PTHR44325:SF1
PFAM:PF13855	PFscan:PS51450	PRINTS:PR00019	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058
UniParc:UPI0002766E29	UniProt:K4BXH3	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5:+:4190580..4192782

Molecular Weight (calculated)

52905.2 Da

IEP (calculated)

5.768

GRAVY (calculated)

0.011

Length

469 amino acids

Sequence
(BLAST)

001: MRGFKNSSRL CVLVTIFILH FGVWCNGDTE NMSAQMEKNE INSLYSTIQG FVGKWWNGSD LYPDPCGWTP IQGVSCDLFD GFWYVTDLNI GPIHDNSLSC
101: APNVEFSSNL FTLKHLRSLS FFNCFVSPRH HPTSIPTERW EFLASSLESL EFRSNPGLIG RIPNSFGRLI KLQSLVLVEN GLSGEIPQNL GDLVNLKRLV
201: LAENKLTGKI PDTFGRFDQL LICDLSRNKL SGVLPKPLFG GLISLLKLDL SQNNLQGEIP QEISLLKNLT LLDLSNNKLS SGLPKSIQEM TCLEELVLSN
301: NPVGGFLDVL DWYNMIKLTT LDLSNMNLTG EIPKSIAELK KLRFLGLNDN KLNGKIPKNL EDLPNVSAIY LYGNNLTGEL QFSQWFYRKM GRRFGAWGNQ
401: NLCYSYGLVS TIDVPFGVKQ CEQELKFVID VEMNSSFVDF QSSMGYLNDC WILRCFVVEL FMVILLLLK

Best Arabidopsis Sequence Match ( AT1G68780.1 )
(BLAST)

001: MKMLRLRKKQ HLVFLLCVWC LVVDWSKAET EESDGSPMEK TEQAALYSTI QGFVGESWNG SYLYPDPCGW TPIQGVTCDI YDELWYVTAL SFGTMKDNSL
101: ACSESPVIRP QLFELKHLKS LSLFNCFTTP NRYLASISDE KWLDLSKSLE RLEIRSNPGL IGELPSVITN LTNLQSLVVL ENKLTGPLPV NLAKLTRLRR
201: LVLSGNRFTG RIPEVYGLTG LLILDVSRNF LSGALPLSVG GLYSLLKLDL SNNYLEGKLP RELESLKNLT LLDLRNNRLS GGLSKEIQEM TSLVELVLSN
301: NRLAGDLTGI KWRNLKNLVV LDLSNTGLKG EIPGSILELK KLRFLGLSNN NLGGKLIPQM ETEMPSLSAL YVNGNNISGE LEFSRYFYER MGRRLGVWGN
401: PNLCYNGDET KNLSDHVPFG VNQCKRIKAD KY

Arabidopsis Description

At1g68780 [Source:UniProtKB/TrEMBL;Acc:Q9CA41]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.