CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97999	Canola	extracellular	93.38	90.71
AT1G13230.1	Thale cress	extracellular	83.82	80.66
CDX83542	Canola	extracellular, plasma membrane, vacuole	69.36	59.83
CDY13577	Canola	vacuole	69.36	59.7
CDX95990	Canola	extracellular, vacuole	54.9	51.97
GSMUA_Achr8P03860_001	Banana	cytosol	45.34	51.97
KRH70637	Soybean	extracellular, golgi	58.09	50.86
CDY33598	Canola	extracellular, golgi	53.43	50.58
KRH75532	Soybean	extracellular, plasma membrane	57.11	50.11
KRG92006	Soybean	extracellular, plasma membrane	57.84	49.48
VIT_01s0011g02800.t01	Wine grape	extracellular	57.6	48.65
KRH34777	Soybean	extracellular, vacuole	56.86	48.43
PGSC0003DMT400002145	Potato	extracellular	54.41	47.54
Solyc05g009990.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	53.68	46.7
PGSC0003DMT400010384	Potato	cytosol	51.23	45.93
Solyc06g069290.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	51.47	45.16
GSMUA_Achr9P00780_001	Banana	cytosol	49.02	44.84
GSMUA_Achr10P...	Banana	cytosol	39.71	43.9
GSMUA_AchrUn_...	Banana	cytosol	39.46	43.51
CDY20429	Canola	cytosol	14.95	42.36
KRH56709	Soybean	extracellular, plasma membrane	49.51	42.35
Os01t0110800-01	Rice	plasma membrane	46.08	41.78
KRH03836	Soybean	extracellular, plasma membrane, vacuole	48.04	41.35
TraesCS3D01G072300.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.59	38.59
KXG32099	Sorghum	plasma membrane	45.34	38.38
TraesCS3D01G072400.2	Wheat	extracellular, plasma membrane	45.83	38.32
HORVU3Hr1G013160.4	Barley	vacuole	45.59	38.27
KXG32097	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	44.61	38.08
TraesCS3B01G086700.2	Wheat	extracellular, plasma membrane, vacuole	45.34	37.76
TraesCS3A01G072700.2	Wheat	extracellular	45.1	37.55
TraesCS3A01G072600.2	Wheat	extracellular	44.85	37.27
Zm00001d040130_P001	Maize	mitochondrion	47.79	36.72
HORVU1Hr1G008420.1	Barley	extracellular	10.05	30.37
CDY38378	Canola	extracellular	32.11	29.5
CDY35199	Canola	extracellular, plasma membrane	31.86	29.48
CDX79853	Canola	extracellular, plasma membrane, vacuole	26.72	25.47
CDY50822	Canola	extracellular, plasma membrane, vacuole	26.47	25.23
CDY54307	Canola	extracellular	30.15	25.0
CDY57686	Canola	extracellular	29.66	24.35

Protein Annotations

EnsemblPlants:CDY19386	EnsemblPlantsGene:GSBRNA2T00008928001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44325	PANTHER:PTHR44325:SF1
PFAM:PF00560	PFAM:PF13855	ProteinID:CDY19386	ProteinID:CDY19386.1	SEG:seg	SUPFAM:SSF52058
UniParc:UPI0004EF4CD5	UniProt:A0A078G227	MapMan:35.1	:	:	:

Description

BnaC05g08950DBnaC05g08950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G227]

Coordinates

chrLK032095:-:505032..506753

Molecular Weight (calculated)

45695.6 Da

IEP (calculated)

6.305

GRAVY (calculated)

-0.119

Length

408 amino acids

Sequence
(BLAST)

001: MMWRMCTGDE SLPEVTYSEE APMDKREREA LYSAIQGFVG DSWNGSDLYP DPCGWTPIQG VSCDMYNDLW YVTDLSLGLI HENSLPCSSS LEIRPELFEL
101: KHLRSLSFFN CFISPIVIAK EGWISFAANL DSLEFRSNPG LIGNLPETLG NLTNLKSLVV LENGFSGGLS SSICNLNSLK RMVLAGNSFK GMIPNCFQGL
201: KKLLIMDLSR NSFSGTLPSS FGDLTSLLKF DLSNNFLEGK LPQELGLLKN LTLLDLRKNR FSGGLSNNIE RMQSLTELVL SDNPMGEEMV GIKWEKMRNL
301: VILDVSKMGL RGEIPIGLTN LKRLRFLGLN DNNLTGFVPS ELEALPCIGS LYINGNNLRG ELRFSRKFYE KMGRRFKAWK NPNLCQPFEI VMSEPQKHLL
401: PLGVKSCT

Best Arabidopsis Sequence Match ( AT1G13230.1 )
(BLAST)

001: MLWQTFFSSL LLLSLLFGCN GDESLPEVTD SEEAPMDKRE REALYSAIQG FVGDSWNGSA LYPDPCGWTP IQGVSCDIYN DLWYVTDLSL GLIYENSLPC
101: SSSLQIRPEL FELKHLRSLS FFNCFISPMV IAKEELWTNF ASNLESLEFR SNPGLIGELP ETIGNLTKLK SLVVLENGFS GELPASICNL KRLKRLVFAG
201: NSFAGMIPNC FKGLKELLIL DLSRNSFSGT LPTSFGDLVS LLKLDLSNNL LEGNLPQELG FLKNLTLLDL RNNRFSGGLS KNIENIQSLT ELVLSNNPMG
301: EEDMVGTNWG KMSNLVVLDL SKMGLRGEIP TSLTNLKRLR FLGLNNNNLT GFVPSKKLEA LPCLGALYIN GNNLTGELRF STKFYEKMGR RFKASKNPNL
401: CQPLEMVMSE SHKHLSPLGV KPCT

Arabidopsis Description

PII-2Piriformospora indica-insensitive protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5PP26]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.