Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004336.1-P | Field mustard | extracellular, golgi | 84.72 | 28.31 |
| CDX95990 | Canola | extracellular, vacuole | 84.03 | 28.07 |
| CDY33598 | Canola | extracellular, golgi | 84.03 | 28.07 |
| AT1G68780.1 | Thale cress | extracellular, golgi | 75.69 | 25.23 |
| HORVU1Hr1G008420.1 | Barley | extracellular | 20.83 | 22.22 |
| KRH70637 | Soybean | extracellular, golgi | 52.78 | 16.31 |
| KRH75532 | Soybean | extracellular, plasma membrane | 52.08 | 16.13 |
| GSMUA_Achr10P... | Banana | cytosol | 40.97 | 15.99 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.97 | 15.95 |
| KRG92006 | Soybean | extracellular, plasma membrane | 50.69 | 15.3 |
| KRH34777 | Soybean | extracellular, vacuole | 50.69 | 15.24 |
| CDY19386 | Canola | cytosol | 42.36 | 14.95 |
| CDX97999 | Canola | extracellular | 43.06 | 14.76 |
| GSMUA_Achr9P00780_001 | Banana | cytosol | 45.14 | 14.57 |
| Solyc05g009990.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 47.22 | 14.5 |
| PGSC0003DMT400002145 | Potato | extracellular | 46.53 | 14.35 |
| Os01t0110800-01 | Rice | plasma membrane | 43.75 | 14.0 |
| VIT_01s0011g02800.t01 | Wine grape | extracellular | 46.53 | 13.87 |
| GSMUA_Achr8P03860_001 | Banana | cytosol | 34.03 | 13.76 |
| PGSC0003DMT400010384 | Potato | cytosol | 43.06 | 13.63 |
| Solyc06g069290.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 43.06 | 13.33 |
| KXG32099 | Sorghum | plasma membrane | 44.44 | 13.28 |
| KRH56709 | Soybean | extracellular, plasma membrane | 43.75 | 13.21 |
| KRH03836 | Soybean | extracellular, plasma membrane, vacuole | 43.06 | 13.08 |
| KXG32097 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 43.06 | 12.97 |
| CDX83542 | Canola | extracellular, plasma membrane, vacuole | 42.36 | 12.9 |
| CDY13577 | Canola | vacuole | 42.36 | 12.87 |
| Zm00001d040130_P001 | Maize | mitochondrion | 46.53 | 12.62 |
| TraesCS3D01G072400.2 | Wheat | extracellular, plasma membrane | 38.19 | 11.27 |
| TraesCS3D01G072300.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 37.5 | 11.2 |
| TraesCS3A01G072700.2 | Wheat | extracellular | 37.5 | 11.02 |
| TraesCS3B01G086700.2 | Wheat | extracellular, plasma membrane, vacuole | 37.5 | 11.02 |
| TraesCS3A01G072600.2 | Wheat | extracellular | 37.5 | 11.0 |
| HORVU3Hr1G013160.4 | Barley | vacuole | 36.81 | 10.91 |
| CDY54307 | Canola | extracellular | 31.25 | 9.15 |
| CDY57686 | Canola | extracellular | 31.25 | 9.05 |
| CDY35199 | Canola | extracellular, plasma membrane | 27.08 | 8.84 |
| CDY38378 | Canola | extracellular | 25.69 | 8.33 |
| CDX79853 | Canola | extracellular, plasma membrane, vacuole | 24.31 | 8.18 |
| CDY50822 | Canola | extracellular, plasma membrane, vacuole | 24.31 | 8.18 |
Protein Annotations
| EnsemblPlants:CDY20429 | EnsemblPlantsGene:GSBRNA2T00012497001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44325 |
| PANTHER:PTHR44325:SF1 | ProteinID:CDY20429 | ProteinID:CDY20429.1 | SEG:seg | SUPFAM:SSF52058 | UniParc:UPI0004EE2922 |
| UniProt:A0A078G4X9 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g06150DBnaC04g06150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4X9]
Coordinates
chrLK032108:-:4685..5119
Molecular Weight (calculated)
16269.9 Da
IEP (calculated)
9.579
GRAVY (calculated)
-0.254
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLVELVLS NNHLEGDLTG IKWRNLKNLV LLDLSNTRLK GEIPWSILEL KKLRFLGLSN NSLGGKLFPQ METEMPCLNA LYVNGNSISG ELEFSKKFYE
101: RMGRRLGVWG NPSLCYNGDE IKNLRDHAPF GVNQCKRMKA VTLA
101: RMGRRLGVWG NPSLCYNGDE IKNLRDHAPF GVNQCKRMKA VTLA
001: MKMLRLRKKQ HLVFLLCVWC LVVDWSKAET EESDGSPMEK TEQAALYSTI QGFVGESWNG SYLYPDPCGW TPIQGVTCDI YDELWYVTAL SFGTMKDNSL
101: ACSESPVIRP QLFELKHLKS LSLFNCFTTP NRYLASISDE KWLDLSKSLE RLEIRSNPGL IGELPSVITN LTNLQSLVVL ENKLTGPLPV NLAKLTRLRR
201: LVLSGNRFTG RIPEVYGLTG LLILDVSRNF LSGALPLSVG GLYSLLKLDL SNNYLEGKLP RELESLKNLT LLDLRNNRLS GGLSKEIQEM TSLVELVLSN
301: NRLAGDLTGI KWRNLKNLVV LDLSNTGLKG EIPGSILELK KLRFLGLSNN NLGGKLIPQM ETEMPSLSAL YVNGNNISGE LEFSRYFYER MGRRLGVWGN
401: PNLCYNGDET KNLSDHVPFG VNQCKRIKAD KY
101: ACSESPVIRP QLFELKHLKS LSLFNCFTTP NRYLASISDE KWLDLSKSLE RLEIRSNPGL IGELPSVITN LTNLQSLVVL ENKLTGPLPV NLAKLTRLRR
201: LVLSGNRFTG RIPEVYGLTG LLILDVSRNF LSGALPLSVG GLYSLLKLDL SNNYLEGKLP RELESLKNLT LLDLRNNRLS GGLSKEIQEM TSLVELVLSN
301: NRLAGDLTGI KWRNLKNLVV LDLSNTGLKG EIPGSILELK KLRFLGLSNN NLGGKLIPQM ETEMPSLSAL YVNGNNISGE LEFSRYFYER MGRRLGVWGN
401: PNLCYNGDET KNLSDHVPFG VNQCKRIKAD KY
Arabidopsis Description
At1g68780 [Source:UniProtKB/TrEMBL;Acc:Q9CA41]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.