CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35199	Canola	extracellular, plasma membrane	85.14	85.71
AT4G28560.1	Thale cress	extracellular, vacuole	71.85	70.89
PGSC0003DMT400026717	Potato	cytosol	47.07	49.41
Solyc09g072630.2.1	Tomato	extracellular	47.3	48.5
VIT_07s0005g03750.t01	Wine grape	plasma membrane	49.32	47.1
KRH32220	Soybean	extracellular, plasma membrane, vacuole	46.85	46.64
KRH19593	Soybean	extracellular, plasma membrane	42.57	44.16
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	42.57	40.91
CDX97999	Canola	extracellular	30.63	32.38
CDY19386	Canola	cytosol	29.5	32.11
Os06t0627500-01	Rice	extracellular	31.98	32.05
CDY50822	Canola	extracellular, plasma membrane, vacuole	28.6	29.67
CDX79853	Canola	extracellular, plasma membrane, vacuole	28.38	29.44
CDX83542	Canola	extracellular, plasma membrane, vacuole	31.08	29.18
CDX95990	Canola	extracellular, vacuole	27.93	28.77
CDY13577	Canola	vacuole	30.18	28.27
CDY33598	Canola	extracellular, golgi	27.25	28.07
CDY57686	Canola	extracellular	29.73	26.56
CDY54307	Canola	extracellular	29.28	26.42
CDY20429	Canola	cytosol	8.33	25.69

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:A0A078HNI4	UniProt:A0A078HNI4	EnsemblPlants:CDY38378	ProteinID:CDY38378
ProteinID:CDY38378.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00065794001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PANTHER:PTHR44325	PANTHER:PTHR44325:SF3	SMART:SM00369	SUPFAM:SSF52058
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EDD0A8	SEG:seg	:	:

Description

BnaC01g09870DBnaC01g09870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNI4]

Coordinates

chrLK032423:+:58494..59828

Molecular Weight (calculated)

48409.1 Da

IEP (calculated)

5.414

GRAVY (calculated)

0.047

Length

444 amino acids

Sequence
(BLAST)

001: MATSHLHLFL FFLFTGLSTV CQENNDDALP QLPPSEQEAV YRVLNSVNPA IPWRTIFPDN LCASPSDGVV CDYPDASSST SLHVTELHLG YVSDYTQNPP
101: CSSNATLDPL LFTSFEHLRK LFFYKCFTGA PASLPATIPE EFGSVLEELV FIENPSLSGD VGVLIGNFTK LRRLVLTGNG FHGSIPNRIS GLVSLQEITL
201: SRNSLTGGFP SNATSRLKNL KVLDFSHNSL TGDAPDSIGD LTELLKLDLS YNAFSGEIPP GVGNLKKLEF LDLSYNRFGN YGVPLFLAEM TSLKEVYLSG
301: NLLGGRIPEK IWKNLEGISG IGFSRMGLHG NIPASMGSSL KSLWYLALDN NNLDGRIPLE FGLLESAREI NLENNNLTGQ APFSDRFRDM VGKKLKLSGN
401: PHLLLVKESV PPIAGEVLSS SAARALASVC FPTIFMVLYI LIKQ

Best Arabidopsis Sequence Match ( AT4G28560.1 )
(BLAST)

001: MASFTNLSLL LLFLFTATLI TSQQSDDDEN ASPQLALDPS EQEAVYRVLD SVNSAISWRT IFPDDICASP PDGVVCDNLY ASQNGVATSV HVTEFHLGYL
101: SDYTQNPPCS SNATLDPLLF TAFKHLRKLF FYKCFTDARA SLPLTVPEDF GSVLEELVFI ENPSLVGEIG AMIGNFTKLR RLVLTGNGFH GSIPGQIGDL
201: VSLEEITLSR NSLTGGFPAN ATSRLKNLKV LDFSHNFING NAPDSIGDLT ELLKLDLSFN EFTGEVPSGV GNLKKLVFLD LSYNRFGNFG VPLFLAEMSS
301: LREVHLSGNK LGGRIPAIWK NLEGISGIGF SRMGLEGNIP ASMGSSLKNL CFLALDNNNL DGQIPEEFGF LDSAREINLE NNNLTGKAPF SDSFRDRIGK
401: KLKLSGNVNL QVKNSDPHLA GRALYSSARK VLPLIYFPAT LLALYISITQ

Arabidopsis Description

RIC7ROP-interactive CRIB motif-containing protein 7 [Source:UniProtKB/TrEMBL;Acc:F4JLB7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.