CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79853	Canola	extracellular, plasma membrane, vacuole	94.86	94.86
AT2G42800.1	Thale cress	vacuole	78.04	72.29
VIT_12s0142g00620.t01	Wine grape	cytosol	55.84	55.97
Solyc10g007830.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	53.27	51.58
PGSC0003DMT400054822	Potato	plasma membrane	54.44	51.21
GSMUA_Achr4P15510_001	Banana	cytosol	49.07	49.65
Zm00001d002194_P001	Maize	cytosol	11.92	30.91
CDY35199	Canola	extracellular, plasma membrane	30.84	29.93
CDX95990	Canola	extracellular, vacuole	29.91	29.7
CDY57686	Canola	extracellular	33.41	28.77
CDY33598	Canola	extracellular, golgi	28.97	28.77
CDY38378	Canola	extracellular	29.67	28.6
CDY54307	Canola	extracellular	32.71	28.46
CDX83542	Canola	extracellular, plasma membrane, vacuole	30.84	27.91
CDY13577	Canola	vacuole	30.37	27.43
CDX97999	Canola	extracellular	26.87	27.38
CDY19386	Canola	cytosol	25.23	26.47
TraesCS3A01G282900.1	Wheat	extracellular, plasma membrane	27.1	25.72
TraesCS3D01G282900.1	Wheat	extracellular, plasma membrane	26.4	25.17
HORVU3Hr1G069160.1	Barley	extracellular, plasma membrane	26.87	25.11
Os01t0729400-01	Rice	plasma membrane, vacuole	26.17	24.67
TraesCS1B01G365000.1	Wheat	extracellular, vacuole	25.0	24.49
CDY20429	Canola	cytosol	8.18	24.31
TraesCS3B01G316600.1	Wheat	extracellular, plasma membrane	25.93	24.24
Os05t0530701-01	Rice	plasma membrane	26.64	24.2
Zm00001d011757_P001	Maize	extracellular, plasma membrane	25.23	24.11
TraesCS1D01G353700.1	Wheat	extracellular, vacuole	24.07	23.57
EES01405	Sorghum	extracellular, plasma membrane	25.93	23.42
TraesCS1A01G350800.1	Wheat	extracellular, plasma membrane	23.83	23.34
EES19861	Sorghum	plastid	25.47	23.0
Zm00001d038742_P001	Maize	mitochondrion	24.77	22.65
Zm00001d010813_P001	Maize	mitochondrion	24.3	22.37
HORVU1Hr1G081210.1	Barley	cytosol, peroxisome, plasma membrane	24.3	18.6

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078ILK4	EnsemblPlants:CDY50822	ProteinID:CDY50822	ProteinID:CDY50822.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00097547001	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PRINTS:PR00019	PANTHER:PTHR45183
PANTHER:PTHR45183:SF3	SMART:SM00369	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI0004EEFD61	SEG:seg

Description

BnaC04g52590DBnaC04g52590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILK4]

Coordinates

chrLK032942:-:46516..47880

Molecular Weight (calculated)

46499.6 Da

IEP (calculated)

8.999

GRAVY (calculated)

0.048

Length

428 amino acids

Sequence
(BLAST)

001: MKTKRALPSP SSLLFHLLIT PIFLCEANTV SMPPSESETL FTIMDSMSSD QQWRQSHPNP CAPGSSWPGI ECKTGPDRLP HVSRLDFGSA PNPSCKSSAS
101: FPHLIFTLPF LQSVFFFNCF THSPTTIIFP IKLLPNSSLQ QLSLRSNPSL SGQIPPLISS LTSLQILTLS QNKLTGAIPP VLFSLKSLLH LDLSYNKLTG
201: AIPLTLGNLN SLVGLDLSYN SLTGLIPPTI SQLGTLQKLD LSSNALSGAI PQGVEKLRSL SFIALSNNRL RGAFPKGISK LESLQYFILD NNPMHVPLPV
301: ELGLLPKLQE IQLENSGYSG AIPESYTRLM NLSSLSLADN KLTGEIPPGF LRRLGKNLDL SGNRGLCLNP EDEFSVVKTG VDLCGRNVTI HPSSKKSQAS
401: TSRCCYGSCL LANALFQVVL FLGLRHHR

Best Arabidopsis Sequence Match ( AT2G42800.1 )
(BLAST)

001: MTMKRALPSP SSLLFFFLLI TPLFLCQENR VSASMPPSES ETLFKIMESM SSDQQWRQSH PNPCAPGSSW PGIECKTGPD HLSHVSRLDF GSAPNPSCKS
101: SASFPSSIFT LPFLQSVFFF NCFTHFPTTI MFPIKLIPNS SLQQLSLRSN PSLSGQIPPR ISSLKSLQIL TLSQNRLTGD IPPAIFSLKS LVHLDLSYNK
201: LTGKIPLQLG NLNNLVGLDL SYNSLTGTIP PTISQLGMLQ KLDLSSNSLF GRIPEGVEKL RSLSFMALSN NKLKGAFPKG ISNLQSLQYF IMDNNPMFVA
301: LPVELGFLPK LQELQLENSG YSGVIPESYT KLTNLSSLSL ANNRLTGEIP SGFESLPHVF HLNLSRNLLI GVVPFDSSFL RRLGKNLDLS GNRGLCLNPE
401: DEFSVVKTGV DVCGKNVSSG GGLSVHSSKK KSQASRYYRS CFFANALFPF ALFLGLHQRW VL

Arabidopsis Description

AtRLP29RLP29 [Source:UniProtKB/TrEMBL;Acc:A0A178VT48]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.