Factsheet for PGSC0003DMT400054822

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007830.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	79.34	81.67
VIT_12s0142g00620.t01	Wine grape	cytosol	56.26	59.95
AT2G42800.1	Thale cress	vacuole	57.36	56.49
Bra004719.1-P	Field mustard	extracellular, plasma membrane, vacuole	55.38	55.51
CDX79853	Canola	extracellular, plasma membrane, vacuole	51.43	54.67
CDY50822	Canola	extracellular, plasma membrane, vacuole	51.21	54.44
GSMUA_Achr4P15510_001	Banana	cytosol	49.45	53.19
Zm00001d002194_P001	Maize	cytosol	15.6	43.03
PGSC0003DMT400073695	Potato	cytosol	32.75	32.46
PGSC0003DMT400010384	Potato	cytosol	30.77	30.77
PGSC0003DMT400002145	Potato	extracellular	30.99	30.19
PGSC0003DMT400026717	Potato	cytosol	26.59	28.61
TraesCS1B01G365000.1	Wheat	extracellular, vacuole	26.81	27.92
TraesCS1D01G353700.1	Wheat	extracellular, vacuole	26.59	27.69
TraesCS1A01G350800.1	Wheat	extracellular, plasma membrane	26.15	27.23
Os05t0530701-01	Rice	plasma membrane	28.13	27.18
Zm00001d038742_P001	Maize	mitochondrion	27.91	27.14
Zm00001d010813_P001	Maize	mitochondrion	27.69	27.1
TraesCS3D01G282900.1	Wheat	extracellular, plasma membrane	26.59	26.95
Zm00001d011757_P001	Maize	extracellular, plasma membrane	26.37	26.79
TraesCS3B01G316600.1	Wheat	extracellular, plasma membrane	26.81	26.64
TraesCS3A01G282900.1	Wheat	extracellular, plasma membrane	26.37	26.61
Os01t0729400-01	Rice	plasma membrane, vacuole	26.15	26.21
HORVU3Hr1G069160.1	Barley	extracellular, plasma membrane	26.37	26.2
EES01405	Sorghum	extracellular, plasma membrane	27.25	26.16
EES19861	Sorghum	plastid	27.03	25.95
HORVU1Hr1G081210.1	Barley	cytosol, peroxisome, plasma membrane	25.93	21.11

Protein Annotations

EntrezGene:102596273	MapMan:11.10.2.3.3	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1BWX5
PFAM:PF00560	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400021279	PGSC:PGSC0003DMG400021279	EnsemblPlants:PGSC0003DMT400054822	PRINTS:PR00019
PANTHER:PTHR45183	PANTHER:PTHR45183:SF3	SMART:SM00369	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI0002950353
RefSeq:XP_006359995.1	SEG:seg	:	:	:	:

Description

Leucine-rich repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021279]

Coordinates

chr10:+:2787701..2789284

Molecular Weight (calculated)

50867.8 Da

IEP (calculated)

8.208

GRAVY (calculated)

-0.025

Length

455 amino acids

Sequence
(BLAST)

001: MYPFKLFLFP LLLMFFLSTT PPSISSTNVA NINNLTQPNM NPHELETLYK IMESISSDQN WRKSYPNPCQ QSSSWLGIEC KKNTNNIYHV TRLDFGTHPN
101: PTCKKTATFP SLIFQLPNLE SLFFIQCFTH TKTTISIQEN RILQQLSIRS NPSLIGTIPP QISSLKSLQI LTLSQNNLLG QIPPQIFTLN SLIHLDLSYN
201: NLTGQIPNQI GNLINLIGLD FSYNSLTNPI PSTIGLLKSL QKLDLSSNSL TGKIPPTIEK LQSLNFLALS NNKLSGNFPN GIHKLQELQY FLMDDNPMMF
301: ITLPDELSQL HKLQELSLSS SGYSGEIPSS YSQLVNLTTL SLQNNRLTGE IPVEFSRLSH MYHLNLSRNL LDGVVPFNSS FLKRLGRNLD LSGNPGLCLM
401: NQHEGVYVGV NVCGSSSNTI TMPLKKNRSC EASCGVVRSL FLVCVLCFLE LLFCV

Best Arabidopsis Sequence Match ( AT2G42800.1 )
(BLAST)

001: MTMKRALPSP SSLLFFFLLI TPLFLCQENR VSASMPPSES ETLFKIMESM SSDQQWRQSH PNPCAPGSSW PGIECKTGPD HLSHVSRLDF GSAPNPSCKS
101: SASFPSSIFT LPFLQSVFFF NCFTHFPTTI MFPIKLIPNS SLQQLSLRSN PSLSGQIPPR ISSLKSLQIL TLSQNRLTGD IPPAIFSLKS LVHLDLSYNK
201: LTGKIPLQLG NLNNLVGLDL SYNSLTGTIP PTISQLGMLQ KLDLSSNSLF GRIPEGVEKL RSLSFMALSN NKLKGAFPKG ISNLQSLQYF IMDNNPMFVA
301: LPVELGFLPK LQELQLENSG YSGVIPESYT KLTNLSSLSL ANNRLTGEIP SGFESLPHVF HLNLSRNLLI GVVPFDSSFL RRLGKNLDLS GNRGLCLNPE
401: DEFSVVKTGV DVCGKNVSSG GGLSVHSSKK KSQASRYYRS CFFANALFPF ALFLGLHQRW VL

Arabidopsis Description

AtRLP29RLP29 [Source:UniProtKB/TrEMBL;Acc:A0A178VT48]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.