Factsheet for TraesCS3B01G316600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G282900.1	Wheat	extracellular, plasma membrane	90.39	92.2
TraesCS3A01G282900.1	Wheat	extracellular, plasma membrane	90.39	91.8
HORVU3Hr1G069160.1	Barley	extracellular, plasma membrane	90.61	90.61
Os01t0729400-01	Rice	plasma membrane, vacuole	77.95	78.63
Zm00001d011757_P001	Maize	extracellular, plasma membrane	71.4	72.99
EES01405	Sorghum	extracellular, plasma membrane	74.67	72.15
TraesCS1B01G365000.1	Wheat	extracellular, vacuole	61.14	64.07
TraesCS5B01G376600.1	Wheat	plasma membrane	37.34	37.34
GSMUA_Achr4P15510_001	Banana	cytosol	28.6	30.97
VIT_12s0142g00620.t01	Wine grape	cytosol	28.38	30.45
Solyc10g007830.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	26.42	27.38
AT2G42800.1	Thale cress	vacuole	27.07	26.84
PGSC0003DMT400054822	Potato	plasma membrane	26.64	26.81
Bra004719.1-P	Field mustard	extracellular, plasma membrane, vacuole	26.42	26.65
CDY50822	Canola	extracellular, plasma membrane, vacuole	24.24	25.93
CDX79853	Canola	extracellular, plasma membrane, vacuole	23.8	25.47
TraesCS2B01G376300.1	Wheat	extracellular	18.78	17.59
TraesCS3B01G086700.2	Wheat	extracellular, plasma membrane, vacuole	16.59	15.51

Protein Annotations

EnsemblPlants:TraesCS3B01G316600.1	EnsemblPlantsGene:TraesCS3B01G316600	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PANTHER:PTHR45183
PANTHER:PTHR45183:SF3	PFAM:PF13855	PRINTS:PR00019	SEG:seg	SignalP:SignalP-noTM	SMART:SM00369
SUPFAM:SSF52058	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3B:-:508473677..508475053

Molecular Weight (calculated)

48030.9 Da

IEP (calculated)

5.959

GRAVY (calculated)

0.165

Length

458 amino acids

Sequence
(BLAST)

001: MDTTMPAFIA AFLCLLSLAA AVAAAMDPAE RETLFLVMDA VSSDRDWRSE SPDPCGAPWP GLECKPAPGS AAPLHVTRLD FGVEPNPSCK DAATFPPQVL
101: TLPRLQSLFF VDCFNNPAAV TALVLPSANL SSSTLQQLSI RANPSLSGVM PPQLVRLRSL QVLTISQNGL VRGEIPQGIG DLKSLVHLDL SYNSLSGPVP
201: SRISELKGLV GLDLSYNALS GPIPSRIGDL RQLQKLDLSS NNLTGGIPDT IANLTSLTFL ALSNNGLNGH FPPGLSGLRN LQYLIMDNNP MDVALPSELG
301: SLARLRELRL AGSGYSGPIP AAFGQLASLT TLSLQDNNLT GEIPAGLSRL HRIYHLNLSN NGLGGAVPFD GAFLRRLGRN LDLSGNSGLC LDVVRDVGVG
401: VGACHGGGGG DGSLARDSVS SATGVMARGS TDSFRFRLLG PVCVVVISCI FFPPNEYA

Best Arabidopsis Sequence Match ( AT2G42800.1 )
(BLAST)

001: MTMKRALPSP SSLLFFFLLI TPLFLCQENR VSASMPPSES ETLFKIMESM SSDQQWRQSH PNPCAPGSSW PGIECKTGPD HLSHVSRLDF GSAPNPSCKS
101: SASFPSSIFT LPFLQSVFFF NCFTHFPTTI MFPIKLIPNS SLQQLSLRSN PSLSGQIPPR ISSLKSLQIL TLSQNRLTGD IPPAIFSLKS LVHLDLSYNK
201: LTGKIPLQLG NLNNLVGLDL SYNSLTGTIP PTISQLGMLQ KLDLSSNSLF GRIPEGVEKL RSLSFMALSN NKLKGAFPKG ISNLQSLQYF IMDNNPMFVA
301: LPVELGFLPK LQELQLENSG YSGVIPESYT KLTNLSSLSL ANNRLTGEIP SGFESLPHVF HLNLSRNLLI GVVPFDSSFL RRLGKNLDLS GNRGLCLNPE
401: DEFSVVKTGV DVCGKNVSSG GGLSVHSSKK KSQASRYYRS CFFANALFPF ALFLGLHQRW VL

Arabidopsis Description

AtRLP29RLP29 [Source:UniProtKB/TrEMBL;Acc:A0A178VT48]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.