CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004336.1-P	Field mustard	extracellular, golgi	93.04	93.04
CDX95990	Canola	extracellular, vacuole	88.17	88.17
CDY20429	Canola	cytosol	28.07	84.03
AT1G68780.1	Thale cress	extracellular, golgi	79.81	79.63
GSMUA_Achr8P03860_001	Banana	cytosol	44.55	53.93
CDX97999	Canola	extracellular	52.2	53.57
CDY19386	Canola	cytosol	50.58	53.43
KRH75532	Soybean	extracellular, plasma membrane	55.45	51.4
KRH70637	Soybean	extracellular, golgi	55.22	51.07
KRG92006	Soybean	extracellular, plasma membrane	54.29	49.06
KRH34777	Soybean	extracellular, vacuole	53.83	48.43
PGSC0003DMT400002145	Potato	extracellular	51.97	47.97
CDX83542	Canola	extracellular, plasma membrane, vacuole	52.44	47.78
CDY13577	Canola	vacuole	52.44	47.68
VIT_01s0011g02800.t01	Wine grape	extracellular	53.13	47.41
GSMUA_Achr9P00780_001	Banana	cytosol	48.72	47.09
Solyc05g009990.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	50.58	46.48
Solyc06g069290.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	50.12	46.45
PGSC0003DMT400010384	Potato	cytosol	48.96	46.37
KRH56709	Soybean	extracellular, plasma membrane	48.26	43.61
KRH03836	Soybean	extracellular, plasma membrane, vacuole	47.8	43.46
Os01t0110800-01	Rice	plasma membrane	45.24	43.33
GSMUA_AchrUn_...	Banana	cytosol	36.66	42.7
GSMUA_Achr10P...	Banana	cytosol	36.19	42.28
TraesCS3D01G072300.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.32	39.63
HORVU3Hr1G013160.4	Barley	vacuole	44.08	39.09
KXG32099	Sorghum	plasma membrane	43.62	39.0
TraesCS3D01G072400.2	Wheat	extracellular, plasma membrane	44.08	38.93
KXG32097	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	43.16	38.91
TraesCS3B01G086700.2	Wheat	extracellular, plasma membrane, vacuole	43.85	38.57
TraesCS3A01G072700.2	Wheat	extracellular	43.16	37.96
TraesCS3A01G072600.2	Wheat	extracellular	43.16	37.88
Zm00001d040130_P001	Maize	mitochondrion	46.64	37.85
CDX79853	Canola	extracellular, plasma membrane, vacuole	28.77	28.97
CDY50822	Canola	extracellular, plasma membrane, vacuole	28.77	28.97
CDY35199	Canola	extracellular, plasma membrane	29.47	28.8
CDY38378	Canola	extracellular	28.07	27.25
CDY57686	Canola	extracellular	31.09	26.96
CDY54307	Canola	extracellular	30.63	26.83
HORVU1Hr1G008420.1	Barley	extracellular	7.66	24.44

Protein Annotations

EnsemblPlants:CDY33598	EnsemblPlantsGene:GSBRNA2T00054901001	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44325
PANTHER:PTHR44325:SF1	ProteinID:CDY33598	ProteinID:CDY33598.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058
UniParc:UPI0004EADCB1	UniProt:A0A078H9U7	MapMan:35.1	:	:	:

Description

BnaC06g29540DBnaC06g29540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9U7]

Coordinates

chrLK032317:+:416054..417949

Molecular Weight (calculated)

48243.4 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.092

Length

431 amino acids

Sequence
(BLAST)

001: MLRFTKKQQL YFLLCVWCLV VNWSSAETEE SEGGPMGETE KAALYSTVQG FVGDSWNGSY LFPDPCGWTP IQGVTCDLFD DLWYVTALTF GSMRDNSLAC
101: TEIPVIRPQL FELKHLKSLS LFNCFTSPNQ YLASVSDEKW LDLSNNLETL EIRSNPGLIG ELPSFITSLT NLQSLVVLEN RLTGSLPENL AKLTRLRRLV
201: LSGNRFTGRI PEVHGLTGLL ILDLSRNFFS GPLPLSVGGL SSLLKLDVSN NYLEGKVPIE LQSLKNLTLF DLGNNRFSGG LTKEIQEMSS LVELVLSNNH
301: LEGDLTGIKW RNLKNLVVLD LSNTRLKGEI PWSILELKKL RFLGLSNNSL GGKLFPQMET EMPCLNALYV NGNNISGELE FSKKFYERMG RRLGVWGNPN
401: LCYNGDEIKN LRDHAPFGVN QCKRMKAVTL A

Best Arabidopsis Sequence Match ( AT1G68780.1 )
(BLAST)

001: MKMLRLRKKQ HLVFLLCVWC LVVDWSKAET EESDGSPMEK TEQAALYSTI QGFVGESWNG SYLYPDPCGW TPIQGVTCDI YDELWYVTAL SFGTMKDNSL
101: ACSESPVIRP QLFELKHLKS LSLFNCFTTP NRYLASISDE KWLDLSKSLE RLEIRSNPGL IGELPSVITN LTNLQSLVVL ENKLTGPLPV NLAKLTRLRR
201: LVLSGNRFTG RIPEVYGLTG LLILDVSRNF LSGALPLSVG GLYSLLKLDL SNNYLEGKLP RELESLKNLT LLDLRNNRLS GGLSKEIQEM TSLVELVLSN
301: NRLAGDLTGI KWRNLKNLVV LDLSNTGLKG EIPGSILELK KLRFLGLSNN NLGGKLIPQM ETEMPSLSAL YVNGNNISGE LEFSRYFYER MGRRLGVWGN
401: PNLCYNGDET KNLSDHVPFG VNQCKRIKAD KY

Arabidopsis Description

At1g68780 [Source:UniProtKB/TrEMBL;Acc:Q9CA41]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.