Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0104g01580.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | VIT_07s0104g01580.t01 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g074700.1.1 | Tomato | nucleus | 3.43 | 62.71 |
| Solyc09g074690.2.1 | Tomato | nucleus | 17.63 | 61.69 |
| Solyc09g074720.1.1 | Tomato | nucleus | 11.6 | 52.3 |
| Solyc09g074710.2.1 | Tomato | nucleus | 8.81 | 51.63 |
| KRH68148 | Soybean | nucleus | 47.87 | 50.39 |
| KRG96407 | Soybean | nucleus | 47.31 | 49.8 |
| GSMUA_Achr11P... | Banana | plastid | 12.99 | 49.3 |
| GSMUA_Achr11P... | Banana | mitochondrion | 4.64 | 48.54 |
| CDX91289 | Canola | nucleus | 37.2 | 44.85 |
| CDX97277 | Canola | nucleus | 36.92 | 44.52 |
| Bra018540.1-P | Field mustard | nucleus | 33.21 | 44.03 |
| AT4G02560.1 | Thale cress | nucleus | 37.38 | 42.29 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 8.07 | 42.03 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 34.51 | 38.43 |
| Os01t0934300-02 | Rice | nucleus | 34.32 | 37.41 |
| OQU88162 | Sorghum | nucleus | 33.77 | 31.68 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 35.62 | 30.28 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 35.53 | 30.25 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 34.51 | 30.17 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 35.25 | 30.06 |
| GSMUA_Achr11P... | Banana | nucleus | 19.85 | 30.01 |
| Zm00001d042212_P007 | Maize | nucleus | 33.95 | 29.78 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 14.66 | 24.42 |
| Os01t0934400-01 | Rice | cytosol | 3.43 | 20.56 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100249358 | wikigene:100249358 | MapMan:15.5.3.9 | ProteinID:CCB56756 | ProteinID:CCB56756.1 |
| UniProt:F6HQ00 | EMBL:FN596005 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0010228 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR035441 | EntrezGene:LOC100249358 | wikigene:LOC100249358 | PFscan:PS50071 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 |
| SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF47676 | TIGR:TC70082 | InterPro:TFIIS/LEDGF_dom_sf | UniParc:UPI0002108845 |
| ArrayExpress:VIT_07s0104g01580 | EnsemblPlantsGene:VIT_07s0104g01580 | EnsemblPlants:VIT_07s0104g01580.t01 | RefSeq:XP_002269445 | RefSeq:XP_002269445.2 | RefSeq:XP_010652054.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:2542254..2554694
Molecular Weight (calculated)
118573.0 Da
IEP (calculated)
9.580
GRAVY (calculated)
-0.535
Length
1078 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEVLKENISE IDIGTSTASF KKFVDSQNEL FNSQVDQLGS IVLKQCELTG VNPLSQEMAA GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAISKKESRE
0101: ISALFGVTVT QVREFFAGQR SRVRKVVRLS REKSVRSDVC KELQDGVLIP SDPMIPIDQA PLNSIGPSSA EEVPSCSTQA EALHGLDDSE RYFLENIFTL
0201: MRKEETFSGQ VELMEWILQM QNSSVLNWFL SKGGMMILAT WLSQAANEEQ TSVLLVILKV LCHLPLHKAL PVHMSAILHS VNRLRFYRTS DISNRARVLL
0301: SRWSKMLARI QPIKTSNSAK LSSDAQREII MKQSIGEIMG DESWKSEINI PGQALAPFCE NSETVRKLEP LQALKLLPSS AEDTNRKSIR GVSSSQTRER
0401: RKVQLVEQPG QKTAGRILQP GRAVPVSHGR PMSADDIQKA KMRAQFMQSK YGKIGSSSKD KHEANSEGPS SKSSSSQTST LLSVSKAHGR PKIEENKKPV
0501: TLPPRASNKV EASPQPKLEL METLFEKCKK VQIPWQAPPE IRFNPAWRVG TGESSKEVEV QKNRIRREKE TVYEALQDIP PNPKEPWDLE MDYDDSLTPV
0601: IPIEQPPDAD SAAESPIPPE PVVGPGETEK IAVAVVAPEP SSSSHAGNAS SSNISSAALP DFELLSVLLK NPELVFALMN GQAGSLSSED TVRLLDMIKA
0701: NGVGSLGTLN GLGRKAEEKV EVSLPSPTPS SNPVPVPSGW RPEFAKNPFS RQGLTVNSRD MYASSPGVDF TGPARQVSMA NIDITGPPPQ RQLPATNLVL
0801: PPQTPAVIPP PQQPANFPPL SQQPPPSAML PSFSLPQTTS VLPEKRLPST VPSLHQNPPP NSSVLQSTTP EIVLNMNNFP AGGIPLPRLL AAAAPSVRVE
0901: TLSNHKPGSV VMNAPERGPI SYSVPQMLPR PTRPLTQQQP SSMLPPEPPH PLHHTMPMGN LGPVPDSWRG RQGLASNPLN QNNYNLPVGG ALQHPPLTAP
1001: SRERNEYVFE DDFETWSPEG SPSRTPEYML GGHNPLEPRM SSGRNYGPER LRHQHRNSSG YRDHNNKYGN RRWRDRRR
0101: ISALFGVTVT QVREFFAGQR SRVRKVVRLS REKSVRSDVC KELQDGVLIP SDPMIPIDQA PLNSIGPSSA EEVPSCSTQA EALHGLDDSE RYFLENIFTL
0201: MRKEETFSGQ VELMEWILQM QNSSVLNWFL SKGGMMILAT WLSQAANEEQ TSVLLVILKV LCHLPLHKAL PVHMSAILHS VNRLRFYRTS DISNRARVLL
0301: SRWSKMLARI QPIKTSNSAK LSSDAQREII MKQSIGEIMG DESWKSEINI PGQALAPFCE NSETVRKLEP LQALKLLPSS AEDTNRKSIR GVSSSQTRER
0401: RKVQLVEQPG QKTAGRILQP GRAVPVSHGR PMSADDIQKA KMRAQFMQSK YGKIGSSSKD KHEANSEGPS SKSSSSQTST LLSVSKAHGR PKIEENKKPV
0501: TLPPRASNKV EASPQPKLEL METLFEKCKK VQIPWQAPPE IRFNPAWRVG TGESSKEVEV QKNRIRREKE TVYEALQDIP PNPKEPWDLE MDYDDSLTPV
0601: IPIEQPPDAD SAAESPIPPE PVVGPGETEK IAVAVVAPEP SSSSHAGNAS SSNISSAALP DFELLSVLLK NPELVFALMN GQAGSLSSED TVRLLDMIKA
0701: NGVGSLGTLN GLGRKAEEKV EVSLPSPTPS SNPVPVPSGW RPEFAKNPFS RQGLTVNSRD MYASSPGVDF TGPARQVSMA NIDITGPPPQ RQLPATNLVL
0801: PPQTPAVIPP PQQPANFPPL SQQPPPSAML PSFSLPQTTS VLPEKRLPST VPSLHQNPPP NSSVLQSTTP EIVLNMNNFP AGGIPLPRLL AAAAPSVRVE
0901: TLSNHKPGSV VMNAPERGPI SYSVPQMLPR PTRPLTQQQP SSMLPPEPPH PLHHTMPMGN LGPVPDSWRG RQGLASNPLN QNNYNLPVGG ALQHPPLTAP
1001: SRERNEYVFE DDFETWSPEG SPSRTPEYML GGHNPLEPRM SSGRNYGPER LRHQHRNSSG YRDHNNKYGN RRWRDRRR
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.