Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| OQU88162 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | OQU88162 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042212_P007 | Maize | nucleus | 83.03 | 77.62 |
| Os01t0934300-02 | Rice | nucleus | 58.83 | 68.35 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 64.75 | 58.77 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 62.84 | 58.56 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 64.32 | 58.28 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 63.97 | 58.15 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 29.5 | 52.4 |
| Solyc09g074690.2.1 | Tomato | nucleus | 13.49 | 50.32 |
| Solyc09g074700.1.1 | Tomato | nucleus | 2.44 | 47.46 |
| GSMUA_Achr11P... | Banana | plastid | 10.71 | 43.31 |
| Solyc09g074720.1.1 | Tomato | nucleus | 8.88 | 42.68 |
| Solyc09g074710.2.1 | Tomato | nucleus | 6.61 | 41.3 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 31.33 | 37.19 |
| Bra018540.1-P | Field mustard | nucleus | 25.67 | 36.29 |
| CDX97277 | Canola | nucleus | 28.2 | 36.24 |
| CDX91289 | Canola | nucleus | 28.2 | 36.24 |
| AT4G02560.1 | Thale cress | nucleus | 29.33 | 35.36 |
| KRH68148 | Soybean | nucleus | 30.81 | 34.57 |
| KRG96407 | Soybean | nucleus | 30.64 | 34.38 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 6.18 | 34.3 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 31.68 | 33.77 |
| GSMUA_Achr11P... | Banana | nucleus | 18.19 | 29.31 |
Protein Annotations
| EnsemblPlants:OQU88162 | EnsemblPlantsGene:SORBI_3003G416700 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | ProteinID:OQU88162 |
| ProteinID:OQU88162.1 | SEG:seg | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0009DC8515 | UniProt:A0A1W0W1C9 |
| MapMan:15.5.3.9 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:72282155..72291108
Molecular Weight (calculated)
127064.0 Da
IEP (calculated)
8.949
GRAVY (calculated)
-0.667
Length
1149 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVAAQQQLLH EQVDQLQRLV VAQCRLTGVN PLAQEMAAGA LSIKIGKRPR DLLNPKAVKY MQSLFALKDT LGKRETRELS LLCGVTVTQV REFFTIQKSR
0101: VRKFVRLSQE KALRIETPKE QDNAYSIDSE QIPLDIEAQA EVIEPLSTLE PVVLQSSLQP TDVPQVSLQS MALQQSDLQH MEVFQNTLHK AEAQQNFAAP
0201: MMPPGTMVMQ PTDAKISSDS VQKDIKQEET HPGVESEDKK FLESIFALMQ KEETFSGQVK LMEWILQINN ATVLSRFVTM GGLTIMSTWL SQAAIEEQTS
0301: VIHVIFKVLL HLPLHKALPV HMSVVLQTIN RLRFYRTQDI SSRARNLLSR LSKVLVRIQA LKQPQKDSIC KQRISEILRD ESWKSEVDIT EKILALADGA
0401: NESRKPEPKK TPMLLTASAD ETNKRSSVQT KSKQKRKVLL VEHPNKKVAG KNANSVRNTS TNNSRPLSAD DIQKAKMRAM FMQEKYGKVD TNKASDKPQA
0501: METPKRAGLV NSNASPMPIS PRTSAARPVD PSPSTSKQST DSQPDNREIS GGLKLDIGSK TNVIEKLDSK RVLWQIPPAV WIDPSWSVGA GDNSKEVEVQ
0601: TQRNRREKET FYASQKDIPT NPKDPWDLEM DFDDSLTPEI PIDQTPDVDA METDSVRAAP IAVAPVKDKQ IESTSSTSGA VADGAGADTD YELLTVLLKN
0701: PELVFALTSN NKGENMPNEQ TIALLDTLKQ TGLSLSELVN SLGNGAGFPK EPEPEAEPLP ASLPSPTPPD RTSMAVWRPE NPMQVMAPNL QQPCLSSRGN
0801: TPPIANAMQQ SFSNVVSSLP SQLYASVSVL PAQIQANTPS LPQLAVSVNP PIRHVSPVNN HPNRALVHQH NQQYALLSDP VATPLHQQAA VSKSTHGVQS
0901: IPNPAVARSS VPEPNASYTT LPWQSSAADI IHTGRNAATD PWAARTTNSY NTASANTVPF ANQNAYGDQS SHTAYNSYGS AAVSSHSVLP GHGHDRNGYS
1001: RPTVSEYQSL MVQDSHRRHS RSPDPGVVRD YGGTQGYNQQ SRTHWSAGQG QQSYNPEPSR QWSSSQAHQG YTPAESSRQW STAHQSYTPE PSRQRSSERQ
1101: GYNVEPSRSW SSGQQGQNPE ASRQWNRGKQ DPYYNPSDGR RSYDQHRRR
0101: VRKFVRLSQE KALRIETPKE QDNAYSIDSE QIPLDIEAQA EVIEPLSTLE PVVLQSSLQP TDVPQVSLQS MALQQSDLQH MEVFQNTLHK AEAQQNFAAP
0201: MMPPGTMVMQ PTDAKISSDS VQKDIKQEET HPGVESEDKK FLESIFALMQ KEETFSGQVK LMEWILQINN ATVLSRFVTM GGLTIMSTWL SQAAIEEQTS
0301: VIHVIFKVLL HLPLHKALPV HMSVVLQTIN RLRFYRTQDI SSRARNLLSR LSKVLVRIQA LKQPQKDSIC KQRISEILRD ESWKSEVDIT EKILALADGA
0401: NESRKPEPKK TPMLLTASAD ETNKRSSVQT KSKQKRKVLL VEHPNKKVAG KNANSVRNTS TNNSRPLSAD DIQKAKMRAM FMQEKYGKVD TNKASDKPQA
0501: METPKRAGLV NSNASPMPIS PRTSAARPVD PSPSTSKQST DSQPDNREIS GGLKLDIGSK TNVIEKLDSK RVLWQIPPAV WIDPSWSVGA GDNSKEVEVQ
0601: TQRNRREKET FYASQKDIPT NPKDPWDLEM DFDDSLTPEI PIDQTPDVDA METDSVRAAP IAVAPVKDKQ IESTSSTSGA VADGAGADTD YELLTVLLKN
0701: PELVFALTSN NKGENMPNEQ TIALLDTLKQ TGLSLSELVN SLGNGAGFPK EPEPEAEPLP ASLPSPTPPD RTSMAVWRPE NPMQVMAPNL QQPCLSSRGN
0801: TPPIANAMQQ SFSNVVSSLP SQLYASVSVL PAQIQANTPS LPQLAVSVNP PIRHVSPVNN HPNRALVHQH NQQYALLSDP VATPLHQQAA VSKSTHGVQS
0901: IPNPAVARSS VPEPNASYTT LPWQSSAADI IHTGRNAATD PWAARTTNSY NTASANTVPF ANQNAYGDQS SHTAYNSYGS AAVSSHSVLP GHGHDRNGYS
1001: RPTVSEYQSL MVQDSHRRHS RSPDPGVVRD YGGTQGYNQQ SRTHWSAGQG QQSYNPEPSR QWSSSQAHQG YTPAESSRQW STAHQSYTPE PSRQRSSERQ
1101: GYNVEPSRSW SSGQQGQNPE ASRQWNRGKQ DPYYNPSDGR RSYDQHRRR
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.