Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | KRG96407 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | KRH68148 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68148 | Soybean | nucleus | 91.5 | 91.5 |
| Solyc09g074690.2.1 | Tomato | nucleus | 18.07 | 60.06 |
| Solyc09g074700.1.1 | Tomato | nucleus | 3.22 | 55.93 |
| Solyc09g074720.1.1 | Tomato | nucleus | 12.79 | 54.81 |
| Solyc09g074710.2.1 | Tomato | nucleus | 9.38 | 52.17 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 49.8 | 47.31 |
| GSMUA_Achr11P... | Banana | mitochondrion | 4.59 | 45.63 |
| CDX91289 | Canola | nucleus | 39.75 | 45.53 |
| CDX97277 | Canola | nucleus | 39.75 | 45.53 |
| Bra018540.1-P | Field mustard | nucleus | 34.77 | 43.79 |
| AT4G02560.1 | Thale cress | nucleus | 40.14 | 43.13 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 8.69 | 43.0 |
| GSMUA_Achr11P... | Banana | plastid | 11.91 | 42.96 |
| Os01t0934300-02 | Rice | nucleus | 34.08 | 35.29 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 32.71 | 34.61 |
| OQU88162 | Sorghum | nucleus | 34.38 | 30.64 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 34.96 | 29.03 |
| Zm00001d042212_P007 | Maize | nucleus | 34.77 | 28.97 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 35.74 | 28.86 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 35.35 | 28.64 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 34.96 | 28.28 |
| GSMUA_Achr11P... | Banana | nucleus | 19.04 | 27.35 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 14.75 | 23.34 |
| Os01t0934400-01 | Rice | cytosol | 3.22 | 18.33 |
Protein Annotations
| Gene3D:1.10.10.60 | Gene3D:1.20.930.10 | EntrezGene:100806633 | MapMan:15.5.3.9 | EMBL:ACUP02012154 | EnsemblPlantsGene:GLYMA_19G208700 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | UniProt:I1NB35 | InterPro:IPR001356 |
| InterPro:IPR035441 | EnsemblPlants:KRG96407 | ProteinID:KRG96407 | ProteinID:KRG96407.1 | PFAM:PF00046 | PFscan:PS50071 |
| PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF47676 | InterPro:TFIIS/LEDGF_dom_sf |
| UniParc:UPI000233E463 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr19:+:46362449..46370856
Molecular Weight (calculated)
113961.0 Da
IEP (calculated)
9.602
GRAVY (calculated)
-0.705
Length
1024 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDAWNEDFSV LEIGSSAESF QKFLVSQKEL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA GALSIKIGKR PRDLLNPKAV NYMQSVFSIK DAISKKELHE
0101: ISALLGVTVT QVRDFFNAQR SRVRRSVQLS RERVLSSNSC EEPHDDQINS DPMRPINPTP LNSAGQSNTE EASCSTQEVA LPDLDDSDKQ FVDNIFSLIQ
0201: KEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGMNLATWL SKAAAEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRTSDI SNRARVLLSK
0301: WSKLFARNQV IKKPNGVKIS IDGHKEMMLS QSIGQFMGSE SWHSNIDVPE DILALSSECS DNFRKMGSPQ GVKLLPPSLD DSNKKSSLGV SSSQSRERRK
0401: VQLVEQPGQK SVSRSSQVTR AGPVSQGRPM SVDDIQKAKM RALFMQSKYG KSGSKESKET KIDSPNKQPQ TNPASIAACS SKVPTPPKIE ENKKPLLLTS
0501: KTTNRLEASY SKPKMDVKEP LWEKCKRVQI PWRTPAEVEL KDTWRVGGGE NSKEVEVQRN RNRRDKEIIY KTVQEMPPNP KEPWDLEMDY DDTLTLEIPI
0601: EQLPDGDGAD IAISPNQVGT HTVQGVASTS STGVATAEPD LELLAVLLKN PELVFALTSG QGGSIPNQET VKLLDMIKSG GVNLGLSENT NGSYGTSVKS
0701: PEKVEVSLPS PTPLSDPRTS GWSSEASKNP FSRRSLAPDR ITQNHAAVAT TNLLSQIPIT GTTVRQQPTV VVPSSRHLTS TSVSPYSLPH ATNVIPEKPS
0801: PLGQVQTSSD VGLTMKNLTT ANASSVNFPG THSTLALRGD GTNYVKPVPN LSVQHEGLSN SFRQPFMPPS PTPSHSSLQQ QRHQHLTQEV HYTEPPYRNP
0901: GRSYPPQIEK SDHGSDNMWR VRQDHVSSSY HSQRNHNNNY NTMVGGSRQS GFWDRNNHAR GEFESWSPEN SPTRNPRYAP GRNYPESRMN HGRNPRPEWS
1001: RQRGSSGHWD PGRQGNRKWH DQRR
0101: ISALLGVTVT QVRDFFNAQR SRVRRSVQLS RERVLSSNSC EEPHDDQINS DPMRPINPTP LNSAGQSNTE EASCSTQEVA LPDLDDSDKQ FVDNIFSLIQ
0201: KEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGMNLATWL SKAAAEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRTSDI SNRARVLLSK
0301: WSKLFARNQV IKKPNGVKIS IDGHKEMMLS QSIGQFMGSE SWHSNIDVPE DILALSSECS DNFRKMGSPQ GVKLLPPSLD DSNKKSSLGV SSSQSRERRK
0401: VQLVEQPGQK SVSRSSQVTR AGPVSQGRPM SVDDIQKAKM RALFMQSKYG KSGSKESKET KIDSPNKQPQ TNPASIAACS SKVPTPPKIE ENKKPLLLTS
0501: KTTNRLEASY SKPKMDVKEP LWEKCKRVQI PWRTPAEVEL KDTWRVGGGE NSKEVEVQRN RNRRDKEIIY KTVQEMPPNP KEPWDLEMDY DDTLTLEIPI
0601: EQLPDGDGAD IAISPNQVGT HTVQGVASTS STGVATAEPD LELLAVLLKN PELVFALTSG QGGSIPNQET VKLLDMIKSG GVNLGLSENT NGSYGTSVKS
0701: PEKVEVSLPS PTPLSDPRTS GWSSEASKNP FSRRSLAPDR ITQNHAAVAT TNLLSQIPIT GTTVRQQPTV VVPSSRHLTS TSVSPYSLPH ATNVIPEKPS
0801: PLGQVQTSSD VGLTMKNLTT ANASSVNFPG THSTLALRGD GTNYVKPVPN LSVQHEGLSN SFRQPFMPPS PTPSHSSLQQ QRHQHLTQEV HYTEPPYRNP
0901: GRSYPPQIEK SDHGSDNMWR VRQDHVSSSY HSQRNHNNNY NTMVGGSRQS GFWDRNNHAR GEFESWSPEN SPTRNPRYAP GRNYPESRMN HGRNPRPEWS
1001: RQRGSSGHWD PGRQGNRKWH DQRR
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.