Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr1P11230_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | plastid | 16.63 | 56.69 |
| Solyc09g074700.1.1 | Tomato | nucleus | 3.1 | 50.85 |
| Solyc09g074720.1.1 | Tomato | nucleus | 11.05 | 44.77 |
| Solyc09g074710.2.1 | Tomato | nucleus | 8.47 | 44.57 |
| GSMUA_Achr11P... | Banana | mitochondrion | 4.65 | 43.69 |
| Solyc09g074690.2.1 | Tomato | nucleus | 13.74 | 43.18 |
| GSMUA_Achr11P... | Banana | nucleus | 31.41 | 42.64 |
| Os01t0934300-02 | Rice | nucleus | 37.81 | 37.01 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 7.54 | 35.27 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 38.43 | 34.51 |
| CDX91289 | Canola | nucleus | 31.82 | 34.45 |
| CDX97277 | Canola | nucleus | 31.61 | 34.23 |
| Bra018540.1-P | Field mustard | nucleus | 28.41 | 33.83 |
| KRH68148 | Soybean | nucleus | 35.23 | 33.3 |
| AT4G02560.1 | Thale cress | nucleus | 32.75 | 33.26 |
| KRG96407 | Soybean | nucleus | 34.61 | 32.71 |
| OQU88162 | Sorghum | nucleus | 37.19 | 31.33 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 38.95 | 30.58 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 39.26 | 30.06 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 39.05 | 29.81 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 38.84 | 29.7 |
| Zm00001d042212_P007 | Maize | nucleus | 35.95 | 28.32 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 18.39 | 27.51 |
| Os01t0934400-01 | Rice | cytosol | 3.0 | 16.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr1G11230_001 | EnsemblPlants:GSMUA_Achr1P11230_001 |
| EnsemblPlants:GSMUA_Achr1T11230_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR035441 | UniProt:M0RYY2 |
| PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF47676 | InterPro:TFIIS/LEDGF_dom_sf | UniParc:UPI00029526FD | SEG:seg | : | : |
Description
Putative homeobox domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G11230_001]
Coordinates
chr1:+:8563352..8574496
Molecular Weight (calculated)
105902.0 Da
IEP (calculated)
9.294
GRAVY (calculated)
-0.555
Length
968 amino acids
Sequence
(BLAST)
(BLAST)
001: MQCFTGKRPR DLLNPKAVKY LQSVFSIKDT IGKKETRELS ALCGVTVSQV REFFAGQRSR VRKLVRLSRE KATRLEASKI SNEEHSSSSD QLKPISKEPS
101: GNAADALVIR EIKPFPDNTG TLGTVKIDQQ DIPNSTGLVK VEEGCRSLSQ EKTVPGVDSD DKEFLDNIFN LMRKEDTFSG QVKLLEWVLC IQNTAVLIWF
201: SNNGGISILA TWLSQAATEE QTTMLLVIFK VLYHLPLHKA LPVHMSAIVP AVNRLRFYRT SDISNRARIL LSRWSKVFKK SQALKRPLVS SSNTAEIEAL
301: HKKRHSKVDI PEFILSLTGG TEITRTTDPK QTLKLLPASS DSSKKHDRSV SLTKFKERRK VLLVEQPDHK AGGRSAQVVR MVSSNHSRPM SADDIQKAKL
401: RAMFMQHKYG KADPSSSGSK SQKNEDLKAS SASQTNNIMS ECKSPQDPPL IKEENSITVS TTDNLLNESE TLINSNPDST PKQVSSGMLN CKLIQWKIPP
501: GTYMNVEWSV GAGENSKEVD AQTQRTRREK ETLSSRLQDI PHDPKEPWDL EMDFDDSLTP EIPTEQPPDA DVEEGPSSSP VKQVDEAPAT VSAPVTTTAS
601: VPSTSDGAPE PDLELLAVLL KNPDLVFALT STQGKNLSSE EMVALLDMLK RNGVALTGML NEVAQPEGKS HPETTPQVQE PPASLPSPTP PSEAARGRWR
701: SEFPVFSRTP VLQPHLPGNR PAAAPPVAAP GLAPSILSMP QVTAAIDSAR QIFPSSSLLP TVSSSAPALP PQTPYAMYPM QQSPVPDFGL PNTAVISSMP
801: RHGSFDHGPS SISGIPSLPT LPHTLQAAHP LPKFEASRAP AWPPAPGAAA AVVRRDTTPD RCFPIQNSYG SHPSGPAPSS HLLPGRRRGE DRNGIELEAR
901: SPTGGPATTF PELQGGWSYN DGSRRDSGWD KRPEWSRQQA PVSRDRHWSG GGDKRKSYMT RNLINVHV
101: GNAADALVIR EIKPFPDNTG TLGTVKIDQQ DIPNSTGLVK VEEGCRSLSQ EKTVPGVDSD DKEFLDNIFN LMRKEDTFSG QVKLLEWVLC IQNTAVLIWF
201: SNNGGISILA TWLSQAATEE QTTMLLVIFK VLYHLPLHKA LPVHMSAIVP AVNRLRFYRT SDISNRARIL LSRWSKVFKK SQALKRPLVS SSNTAEIEAL
301: HKKRHSKVDI PEFILSLTGG TEITRTTDPK QTLKLLPASS DSSKKHDRSV SLTKFKERRK VLLVEQPDHK AGGRSAQVVR MVSSNHSRPM SADDIQKAKL
401: RAMFMQHKYG KADPSSSGSK SQKNEDLKAS SASQTNNIMS ECKSPQDPPL IKEENSITVS TTDNLLNESE TLINSNPDST PKQVSSGMLN CKLIQWKIPP
501: GTYMNVEWSV GAGENSKEVD AQTQRTRREK ETLSSRLQDI PHDPKEPWDL EMDFDDSLTP EIPTEQPPDA DVEEGPSSSP VKQVDEAPAT VSAPVTTTAS
601: VPSTSDGAPE PDLELLAVLL KNPDLVFALT STQGKNLSSE EMVALLDMLK RNGVALTGML NEVAQPEGKS HPETTPQVQE PPASLPSPTP PSEAARGRWR
701: SEFPVFSRTP VLQPHLPGNR PAAAPPVAAP GLAPSILSMP QVTAAIDSAR QIFPSSSLLP TVSSSAPALP PQTPYAMYPM QQSPVPDFGL PNTAVISSMP
801: RHGSFDHGPS SISGIPSLPT LPHTLQAAHP LPKFEASRAP AWPPAPGAAA AVVRRDTTPD RCFPIQNSYG SHPSGPAPSS HLLPGRRRGE DRNGIELEAR
901: SPTGGPATTF PELQGGWSYN DGSRRDSGWD KRPEWSRQQA PVSRDRHWSG GGDKRKSYMT RNLINVHV
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.