Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018540.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | Bra018540.1-P | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91289 | Canola | nucleus | 79.09 | 71.92 |
| CDX97277 | Canola | nucleus | 79.09 | 71.92 |
| AT4G02560.1 | Thale cress | nucleus | 67.04 | 57.19 |
| Solyc09g074690.2.1 | Tomato | nucleus | 20.66 | 54.55 |
| Solyc09g074700.1.1 | Tomato | nucleus | 3.57 | 49.15 |
| GSMUA_Achr11P... | Banana | mitochondrion | 5.9 | 46.6 |
| Solyc09g074710.2.1 | Tomato | nucleus | 10.46 | 46.2 |
| Solyc09g074720.1.1 | Tomato | nucleus | 12.42 | 42.26 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 9.84 | 38.65 |
| GSMUA_Achr11P... | Banana | plastid | 12.79 | 36.62 |
| KRG96407 | Soybean | nucleus | 43.79 | 34.77 |
| KRH68148 | Soybean | nucleus | 43.05 | 34.18 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 44.03 | 33.21 |
| Os01t0934300-02 | Rice | nucleus | 38.01 | 31.24 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 33.83 | 28.41 |
| OQU88162 | Sorghum | nucleus | 36.29 | 25.67 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 39.24 | 25.16 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 39.11 | 25.12 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 38.99 | 25.08 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 37.88 | 24.98 |
| Zm00001d042212_P007 | Maize | nucleus | 36.04 | 23.84 |
| GSMUA_Achr11P... | Banana | nucleus | 18.45 | 21.04 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 14.64 | 18.39 |
| Os01t0934400-01 | Rice | cytosol | 3.44 | 15.56 |
Protein Annotations
| MapMan:15.5.3.9 | EnsemblPlantsGene:Bra018540 | EnsemblPlants:Bra018540.1 | EnsemblPlants:Bra018540.1-P | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0010228 | InterPro:Homeobox_dom |
| InterPro:IPR001356 | UniProt:M4DPU9 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | SMART:SM00389 | UniParc:UPI0002547325 |
| SEG:seg | : | : | : | : | : |
Description
AT4G02560 (E=0.0) LD | LD (luminidependens); transcription factor
Coordinates
chrA05:+:9062231..9066318
Molecular Weight (calculated)
89452.8 Da
IEP (calculated)
7.658
GRAVY (calculated)
-0.487
Length
813 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGAFKEEIE IGSSVESLME LLNSQKELFH SQIDQLQHVV VTQCKLTGVN PLAQEMAAGA LSIQIGKRPR DLLNPKAVKY MQSLFAIKDS ISKKESREIS
101: ALFGISVAQV RDFVVTQKIK VRKQVRLSKE KVMMSSTHAI RGDGVPEQNN AVPHADPVPL NSMDPEPSSI SWGEAENVAL MPKEEVQQED IPPDISDSDK
201: YFVDNIFSIL RKEETFSGQV KLMEWIMQIQ DSSVLIWFLS KGGVLILTTW LSQAATEEQT SVLLLILKVL CHLPLHKASP ENMSAILQSV NGLRFYRTSG
301: VIPEKLMCCV SFINVKVRIV ISLVSLSDLM IRHIKQGKSI AEIMGDKTNP EDILSLSNGR SDNGRRLKSL QGPKLLLTSA DDSTRKHMLG STPSYNKERR
401: KVQMVEQPGQ KAAGRGPQTV RIGTSGRSRP MSADDIQKAK MRAQYMNSKN IKKDTVPSAI GDTRTVVPEN PLAIQSVKDS PPSPKNEAKT EENTPEPSTV
501: QFPPSQNNEA KTEDTPEPSA VQQPVTVNVP VQTVSSPAVN VPVQADEFRN RKLSTPPKSI SSKVGVLLRM SPHTILKNCK RKQIEWHVPP GMVLDELWRV
601: AAGANSKEAD VQKNRNRREK ETTYQSLQTI PLNPKEPWDR EMDFDDSLTP EIPSQQPQEE SITEQQDSLD ERRSAAGAAS TSSSQSGSVE PDYELLAALL
701: KNPDLLYALT SGNPGNLAGQ DMVKLLDVIK TGAPNLSSSS NKKVEENVEV SLPSPTPSTN PGMSGWGQEV TRNPFSRQTQ VGASVARMST QLPVAASMQW
801: QSSNGHSIPQ HAP
101: ALFGISVAQV RDFVVTQKIK VRKQVRLSKE KVMMSSTHAI RGDGVPEQNN AVPHADPVPL NSMDPEPSSI SWGEAENVAL MPKEEVQQED IPPDISDSDK
201: YFVDNIFSIL RKEETFSGQV KLMEWIMQIQ DSSVLIWFLS KGGVLILTTW LSQAATEEQT SVLLLILKVL CHLPLHKASP ENMSAILQSV NGLRFYRTSG
301: VIPEKLMCCV SFINVKVRIV ISLVSLSDLM IRHIKQGKSI AEIMGDKTNP EDILSLSNGR SDNGRRLKSL QGPKLLLTSA DDSTRKHMLG STPSYNKERR
401: KVQMVEQPGQ KAAGRGPQTV RIGTSGRSRP MSADDIQKAK MRAQYMNSKN IKKDTVPSAI GDTRTVVPEN PLAIQSVKDS PPSPKNEAKT EENTPEPSTV
501: QFPPSQNNEA KTEDTPEPSA VQQPVTVNVP VQTVSSPAVN VPVQADEFRN RKLSTPPKSI SSKVGVLLRM SPHTILKNCK RKQIEWHVPP GMVLDELWRV
601: AAGANSKEAD VQKNRNRREK ETTYQSLQTI PLNPKEPWDR EMDFDDSLTP EIPSQQPQEE SITEQQDSLD ERRSAAGAAS TSSSQSGSVE PDYELLAALL
701: KNPDLLYALT SGNPGNLAGQ DMVKLLDVIK TGAPNLSSSS NKKVEENVEV SLPSPTPSTN PGMSGWGQEV TRNPFSRQTQ VGASVARMST QLPVAASMQW
801: QSSNGHSIPQ HAP
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.