Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G454600.1 | |
| TraesCS3B01G493200.1 | |
| TraesCS3D01G447300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | TraesCS3A01G454600.1 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | TraesCS3B01G493200.1 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | TraesCS3D01G447300.1 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G447300.1 | Wheat | nucleus | 95.97 | 95.82 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 92.34 | 92.48 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 86.02 | 88.32 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 41.0 | 80.22 |
| Os01t0934300-02 | Rice | nucleus | 57.35 | 73.41 |
| OQU88162 | Sorghum | nucleus | 58.77 | 64.75 |
| Zm00001d042212_P007 | Maize | nucleus | 57.74 | 59.48 |
| Solyc09g074690.2.1 | Tomato | nucleus | 12.32 | 50.65 |
| Solyc09g074700.1.1 | Tomato | nucleus | 2.21 | 47.46 |
| GSMUA_Achr11P... | Banana | plastid | 9.79 | 43.66 |
| Solyc09g074720.1.1 | Tomato | nucleus | 8.14 | 43.1 |
| Solyc09g074710.2.1 | Tomato | nucleus | 6.24 | 42.93 |
| CDX91289 | Canola | nucleus | 27.65 | 39.15 |
| Bra018540.1-P | Field mustard | nucleus | 25.12 | 39.11 |
| CDX97277 | Canola | nucleus | 27.57 | 39.04 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 29.7 | 38.84 |
| AT4G02560.1 | Thale cress | nucleus | 28.36 | 37.67 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 30.25 | 35.53 |
| KRH68148 | Soybean | nucleus | 28.44 | 35.16 |
| KRG96407 | Soybean | nucleus | 28.28 | 34.96 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 5.69 | 34.78 |
| GSMUA_Achr11P... | Banana | nucleus | 17.46 | 31.0 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G454600.1 | EnsemblPlantsGene:TraesCS3A01G454600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | ncoils:Coil | PANTHER:PTHR33400 |
| PANTHER:PTHR33400:SF1 | PFscan:PS50071 | SEG:seg | SMART:SM00389 | SUPFAM:SSF46689 | TIGR:cd00086 |
| MapMan:15.5.3.9 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:692711951..692720802
Molecular Weight (calculated)
138246.0 Da
IEP (calculated)
7.181
GRAVY (calculated)
-0.656
Length
1266 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELAPFKPAA GALVEWGGAG SIPAMVAAQQ QQLHAQADQL QRLVVAQCRL TGVNPLAQEM AAGALSIKIG KKPRDLLNPK AVNSMQSLFA VKDTLGKRET
0101: REISALCGLT VTKVREFFAS QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTAANVCSL NSEQTPLDIE THAQVVEPLS TLEPLEMFQS SSQLVEVPQS
0201: SLQQPEVQQC TATPIPITPT GTIQPTDAKI NPDSVQKETK QEEVAPGVES EDKKFLDSIF ALMRKEETFS GQVKLMEWIL QINNATILSW FLTMGGLTIV
0301: STWLSQAATE EQTTVILVIF KVLLHLPLHK ALPAHMSVVL QTINRLRFYR TQDISGRARN LLSRLSKVLV RSQASKKPQK DLICKQRISE ILHDESWKSE
0401: VDITEEILAL TEGASESRKP EPKKTPLLLT ASADESYKKS PVQTKSKERR KVQLVEHPNR KAAGKNAHSA RTICTNNSRP LSADDIQKAK MRAMFMQEKY
0501: GKVDTSKVSD KPETTENKKP SGLVNSNEPP MPRSPLTSTA KQPVDPSPST SIQNAVPLSD NPEILATPKL NIALRETPIE KLDSKRVHWQ IPPEVWIDPS
0601: WSVSAGENSK ELDVQAQRNR REKETFYASP KDIPSNPKDP WDSEMDFDDS LTPEIPIEQP PDADTMEVDS VGAAPPNMVV PGEIQQVGST SSSSLTVASG
0701: ANGAASEPDL ELLAVLLKNP QLVFALSSNE VGNLPTEQTV ALLDMLKQTG LGLLELVNSL PNGAGVPNKP EPVPETIPTS LPSPTPPKDL PASVGWRSDF
0801: PTHVRAPNLQ QAQLPNNGNT PFASEVHQSF SNVVSPLPSQ PYTSVSALPA HIQSNAPSLQ SQSAISVNSL TQYAAPVNNM LDRTLVHQHT QPYGLASDHA
0901: AVAIHQQPAV NKPAHEFQNM SNSGLARSLT PEPNAAYATF PWQSGAATVA STGRSTTPDQ WADRVTNSYN DASAPYLNQS AYSNQSSYDA YGSSTSASSQ
1001: GLNRNGYTQT TSEYQMLGRN VRQRHSLSPE PGSARVYGGT PGYILEVSKL GNYGQQSYNP PVASRDWSSG QQSYTPAEPS RDWNSGQQSY IPAEPSSDWS
1101: SVQQSYTSAE LSRDRRSGQQ GYTPAEPSRQ WSSGQQSYTP AEPSRQWSSG QQGYTPAEPS NQWSSGQQGY TPAGPSNHRS SGQQGYTPAE PSRQWSSAQQ
1201: GYTPSDPSVQ QGYTPAEPSR PWSTASQGAQ NPDTSRQWSG AGKQDYYNTP SDGRSPYDQR RRRRWE
0101: REISALCGLT VTKVREFFAS QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTAANVCSL NSEQTPLDIE THAQVVEPLS TLEPLEMFQS SSQLVEVPQS
0201: SLQQPEVQQC TATPIPITPT GTIQPTDAKI NPDSVQKETK QEEVAPGVES EDKKFLDSIF ALMRKEETFS GQVKLMEWIL QINNATILSW FLTMGGLTIV
0301: STWLSQAATE EQTTVILVIF KVLLHLPLHK ALPAHMSVVL QTINRLRFYR TQDISGRARN LLSRLSKVLV RSQASKKPQK DLICKQRISE ILHDESWKSE
0401: VDITEEILAL TEGASESRKP EPKKTPLLLT ASADESYKKS PVQTKSKERR KVQLVEHPNR KAAGKNAHSA RTICTNNSRP LSADDIQKAK MRAMFMQEKY
0501: GKVDTSKVSD KPETTENKKP SGLVNSNEPP MPRSPLTSTA KQPVDPSPST SIQNAVPLSD NPEILATPKL NIALRETPIE KLDSKRVHWQ IPPEVWIDPS
0601: WSVSAGENSK ELDVQAQRNR REKETFYASP KDIPSNPKDP WDSEMDFDDS LTPEIPIEQP PDADTMEVDS VGAAPPNMVV PGEIQQVGST SSSSLTVASG
0701: ANGAASEPDL ELLAVLLKNP QLVFALSSNE VGNLPTEQTV ALLDMLKQTG LGLLELVNSL PNGAGVPNKP EPVPETIPTS LPSPTPPKDL PASVGWRSDF
0801: PTHVRAPNLQ QAQLPNNGNT PFASEVHQSF SNVVSPLPSQ PYTSVSALPA HIQSNAPSLQ SQSAISVNSL TQYAAPVNNM LDRTLVHQHT QPYGLASDHA
0901: AVAIHQQPAV NKPAHEFQNM SNSGLARSLT PEPNAAYATF PWQSGAATVA STGRSTTPDQ WADRVTNSYN DASAPYLNQS AYSNQSSYDA YGSSTSASSQ
1001: GLNRNGYTQT TSEYQMLGRN VRQRHSLSPE PGSARVYGGT PGYILEVSKL GNYGQQSYNP PVASRDWSSG QQSYTPAEPS RDWNSGQQSY IPAEPSSDWS
1101: SVQQSYTSAE LSRDRRSGQQ GYTPAEPSRQ WSSGQQSYTP AEPSRQWSSG QQGYTPAEPS NQWSSGQQGY TPAGPSNHRS SGQQGYTPAE PSRQWSSAQQ
1201: GYTPSDPSVQ QGYTPAEPSR PWSTASQGAQ NPDTSRQWSG AGKQDYYNTP SDGRSPYDQR RRRRWE
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.