Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G454600.1 | |
| TraesCS3B01G493200.1 | |
| TraesCS3D01G447300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | TraesCS3A01G454600.1 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | TraesCS3B01G493200.1 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | TraesCS3D01G447300.1 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G447300.1 | Wheat | nucleus | 94.15 | 93.85 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 92.48 | 92.34 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 86.31 | 88.48 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 42.72 | 83.46 |
| Os01t0934300-02 | Rice | nucleus | 57.83 | 73.91 |
| OQU88162 | Sorghum | nucleus | 58.15 | 63.97 |
| Zm00001d042212_P007 | Maize | nucleus | 57.52 | 59.15 |
| Solyc09g074690.2.1 | Tomato | nucleus | 12.26 | 50.32 |
| Solyc09g074700.1.1 | Tomato | nucleus | 2.22 | 47.46 |
| GSMUA_Achr11P... | Banana | plastid | 9.73 | 43.31 |
| Solyc09g074710.2.1 | Tomato | nucleus | 6.25 | 42.93 |
| Solyc09g074720.1.1 | Tomato | nucleus | 8.07 | 42.68 |
| CDX91289 | Canola | nucleus | 27.77 | 39.26 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 30.06 | 39.26 |
| CDX97277 | Canola | nucleus | 27.69 | 39.15 |
| Bra018540.1-P | Field mustard | nucleus | 25.08 | 38.99 |
| AT4G02560.1 | Thale cress | nucleus | 28.4 | 37.67 |
| KRH68148 | Soybean | nucleus | 28.8 | 35.55 |
| KRG96407 | Soybean | nucleus | 28.64 | 35.35 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 30.06 | 35.25 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 5.62 | 34.3 |
| GSMUA_Achr11P... | Banana | nucleus | 17.17 | 30.43 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G493200.1 | EnsemblPlantsGene:TraesCS3B01G493200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 |
| PFAM:PF00046 | PFscan:PS50071 | SEG:seg | SMART:SM00389 | SUPFAM:SSF46689 | TIGR:cd00086 |
| MapMan:15.5.3.9 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:738746431..738754923
Molecular Weight (calculated)
137892.0 Da
IEP (calculated)
7.227
GRAVY (calculated)
-0.672
Length
1264 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELAPFKPAA GALVEWGGAG SIPAMVAAQQ QQLHAQADQL QRLVVAQCRL TGVNPLAQEM AAGALSIKIG KKPRDLLNPK AVNSMQSLFA VKDTLGKRET
0101: REISALCGLT VTQVREFFAS QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTALKLEAS KTATNICSLN TEQTPLDIET HAQVVEPLST LEPLEMFQSS
0201: SQLAEAPQSS LQQPEVQQCT ATPIPVTPTG TIQPTDAKIN PDSVQKETKQ EEVAPGVESE DKKFLDSIFA LMRKEETFSG QVKLMEWILQ INNATILSWF
0301: LTMGGLTIVS TWLSQAATEE QTTVILIIFK VLLHLPLHKA LPAHMSVVLR TINRLRFYRT QDISGRARNL LSRLSKVLVR SQASKKPQKD LICKQRISEI
0401: LHDESWRSEV DITEEILALT EGASESRKPE PKKTPLLLTA SADESYKKSP VQTKSKERRK VQLVEHPNRK AAGKNAHSAR STCTNNSRPL SADDIQKAKM
0501: RAMFMQEKYG KVDTSKVSDK PETTENKKPS GLVNSNEPRM PRSPLTSTAK QPVDPSPSTS IQNAVPLSDN PEILATPKLN IAPRETPIEK LDSKRVHWQI
0601: PPEVWIDPSW SVSAGENSKE LDVQAQRNRR EKETFYASPK DIPSNPKDPW DLEMDFDDSL TPEIPIEQPP DADTMEVDSV GAAPPNVVVP GEIQQVGSTS
0701: SSSLTVAAGA NGAASEPDLE LLAVLLKNPQ LVFALSSNEV GNLPTEQTVA LLDMLKQTGL GLSELVNSLP NGAGVPNEPE PVPETIPTSL PSPTPPKDLP
0801: ASVGWRSDFP THARPSNSQQ AHLPNNGNTP FASEVHQSFS NVVSPLPSQP YTSVSALPAH IQSNAPSLPP QSAVSVNSLT QYAAPMNNMF DRTSVHQHTQ
0901: PYGLASDPTA VAIHQQPAVN KPAHEFQNMS NSGLARSLTP EPNAAAYATF PWQSGAANVA STGRSTTPDQ WADRVTNSFN DASAPHLNQS AYSNQSLQST
1001: YDAYGSSTSA SSQGLNRNGY TQTSEYQMSG RNVRQRHSLS PEPGSARVYG GTQGYIPEVS KLVNYGQQSY NPPVASTDWS SGQQSYTPAE PSRDWSSLQQ
1101: RYTSAESSRD RSTGQQGYTP AEPSRQWSSG QQSYTPAEPS RQWSSGQQGY TPAESSNHQW SSGQQGYTPA GPSNHRSSGQ QGYTPAEPSR QWSSAQQGYT
1201: PSEPSGQQGY TPAEPSRPWS TASQGAQNPD TSRQWSGAGK QQDYYNIPSD GRSPYDQRRR RLWE
0101: REISALCGLT VTQVREFFAS QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTALKLEAS KTATNICSLN TEQTPLDIET HAQVVEPLST LEPLEMFQSS
0201: SQLAEAPQSS LQQPEVQQCT ATPIPVTPTG TIQPTDAKIN PDSVQKETKQ EEVAPGVESE DKKFLDSIFA LMRKEETFSG QVKLMEWILQ INNATILSWF
0301: LTMGGLTIVS TWLSQAATEE QTTVILIIFK VLLHLPLHKA LPAHMSVVLR TINRLRFYRT QDISGRARNL LSRLSKVLVR SQASKKPQKD LICKQRISEI
0401: LHDESWRSEV DITEEILALT EGASESRKPE PKKTPLLLTA SADESYKKSP VQTKSKERRK VQLVEHPNRK AAGKNAHSAR STCTNNSRPL SADDIQKAKM
0501: RAMFMQEKYG KVDTSKVSDK PETTENKKPS GLVNSNEPRM PRSPLTSTAK QPVDPSPSTS IQNAVPLSDN PEILATPKLN IAPRETPIEK LDSKRVHWQI
0601: PPEVWIDPSW SVSAGENSKE LDVQAQRNRR EKETFYASPK DIPSNPKDPW DLEMDFDDSL TPEIPIEQPP DADTMEVDSV GAAPPNVVVP GEIQQVGSTS
0701: SSSLTVAAGA NGAASEPDLE LLAVLLKNPQ LVFALSSNEV GNLPTEQTVA LLDMLKQTGL GLSELVNSLP NGAGVPNEPE PVPETIPTSL PSPTPPKDLP
0801: ASVGWRSDFP THARPSNSQQ AHLPNNGNTP FASEVHQSFS NVVSPLPSQP YTSVSALPAH IQSNAPSLPP QSAVSVNSLT QYAAPMNNMF DRTSVHQHTQ
0901: PYGLASDPTA VAIHQQPAVN KPAHEFQNMS NSGLARSLTP EPNAAAYATF PWQSGAANVA STGRSTTPDQ WADRVTNSFN DASAPHLNQS AYSNQSLQST
1001: YDAYGSSTSA SSQGLNRNGY TQTSEYQMSG RNVRQRHSLS PEPGSARVYG GTQGYIPEVS KLVNYGQQSY NPPVASTDWS SGQQSYTPAE PSRDWSSLQQ
1101: RYTSAESSRD RSTGQQGYTP AEPSRQWSSG QQSYTPAEPS RQWSSGQQGY TPAESSNHQW SSGQQGYTPA GPSNHRSSGQ QGYTPAEPSR QWSSAQQGYT
1201: PSEPSGQQGY TPAEPSRPWS TASQGAQNPD TSRQWSGAGK QQDYYNIPSD GRSPYDQRRR RLWE
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.