Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d042212_P007 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | Zm00001d042212_P007 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU88162 | Sorghum | nucleus | 77.62 | 83.03 |
| Os01t0934300-02 | Rice | nucleus | 54.52 | 67.75 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 59.48 | 57.74 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 59.15 | 57.52 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 59.32 | 57.49 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 57.36 | 57.18 |
| Solyc09g074690.2.1 | Tomato | nucleus | 12.77 | 50.97 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 26.28 | 49.92 |
| Solyc09g074700.1.1 | Tomato | nucleus | 2.2 | 45.76 |
| GSMUA_Achr11P... | Banana | plastid | 10.01 | 43.31 |
| Solyc09g074720.1.1 | Tomato | nucleus | 8.38 | 43.1 |
| Solyc09g074710.2.1 | Tomato | nucleus | 6.1 | 40.76 |
| Bra018540.1-P | Field mustard | nucleus | 23.84 | 36.04 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 28.32 | 35.95 |
| CDX97277 | Canola | nucleus | 25.79 | 35.46 |
| CDX91289 | Canola | nucleus | 25.79 | 35.46 |
| KRH68148 | Soybean | nucleus | 29.13 | 34.96 |
| KRG96407 | Soybean | nucleus | 28.97 | 34.77 |
| AT4G02560.1 | Thale cress | nucleus | 26.69 | 34.42 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 29.78 | 33.95 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 5.7 | 33.82 |
| GSMUA_Achr11P... | Banana | nucleus | 16.19 | 27.91 |
Protein Annotations
| EnsemblPlants:Zm00001d042212_P007 | EnsemblPlants:Zm00001d042212_T007 | EnsemblPlantsGene:Zm00001d042212 | EntrezGene:103650799 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | ncoils:Coil |
| PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | ProteinID:ONM34805.1 | SEG:seg | SUPFAM:SSF46689 | UniParc:UPI000843C984 |
| UniProt:A0A1D6N259 | MapMan:15.5.3.9 | : | : | : | : |
Description
luminidependens protein1 luminidependens protein1
Coordinates
chr3:-:156127890..156138007
Molecular Weight (calculated)
134923.0 Da
IEP (calculated)
8.217
GRAVY (calculated)
-0.513
Length
1229 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELVLVKPAA GALVEVGSGS VAGAGSIPAM VAAQQEILHE QVDQLQRLVV AQCRLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKCM QSLFALKDIL
0101: GKKETREISL LCGVTVTQVR EFFTVQRSRV RKFVRLSQEK ALRIETPKEQ DNSYSINTEQ IPPDIEAQAE VIEPLRTLEP VVLQSSLQPT CVPQISSQSM
0201: ELQQSDLQHM EVFQNSLQQA EAQHNIAAPI MPSGAMVMQP TDAKISSDSV QKEVKQEGVH SGVASEDKKF LESIFALMQK EETFSGQVKL MEWILQINNV
0301: TVLSRFVTMG GLTIMSTWLS QAAIEEQTSV IHVIFKVLLH LPLHKALPVH MSVVLQTINK LRFYRTQVDE IGTLLRLRGI VGFFDYKVAK SSLFGLLCSD
0401: SLIQCFFFFG LVIRTYLIPR SDISSRARNL LSRLSKVLVR IQALKKPQKD LICKQRISEI LRDESWKSEV DITEEVLALT DGANESRKPE PRKTPMLLTA
0501: SAIETNKRSS VQTKSKQKRK VLLVEQPNKK ATWKNANSVR NTSTNNSRPL SADDIQKAKM RAMFMQEKRG KIDINKLSDK PQAMDTKKAA GLVNSNPSAM
0601: PISPHTSAAQ PVDPSPSTSK QSTDPQPDNT EISGGLKLNI GSKNNVIEKL DCKRVLWQIP PAVWIDPSWS VGAGDNSKEL EVQTQRNRRE KETFYTSQKD
0701: VPMNPKDPWD LEMDFDDSLT PEVPIDQVPD VDAMETESVG AAPSAVAPVK DKQIESASST SGAVADDEEA NTDYELLTVL LRNPELVFAL TSNKGENMPN
0801: EQTIALLDTL KQTGLSLSEL VNRLGNGAGL PKEPEPEPEP IPASLPSPTP PDRTSRAVWI PEHAMQVRAA PTLHLPSRGS TPPVANAVQQ GFSNVVSSLP
0901: SQPYAPPVSV LPAQIQANAP PSLPLLAVSV NPPVQHVSPV NNLLNRASVH QHGQQQYALL SDPVATPLHQ QAAGSKPAVA AHPSLPEPNA SSHTAFPWQS
1001: NAADMTHAGR NATADPWAAA RAANSYSTAS ASTVPSANQN AYGDQGKQGA YSSYGSSAAS SRPVVPGHGH DRNGYSRSAL VEYPWDGHHQ RHSRSPDPGV
1101: VRDYDTDYGG AQGYSQQPLT QWSAGKVQQQ GYNPEPSRQW SSSQAHQGGY APAEPSRQWS SSQAHQSYAP ELPRQWSSER RGYDDAEPSR TWSSGQQNPE
1201: APRQWSRGKQ DPYYSPSHSR RSYDQHRRR
0101: GKKETREISL LCGVTVTQVR EFFTVQRSRV RKFVRLSQEK ALRIETPKEQ DNSYSINTEQ IPPDIEAQAE VIEPLRTLEP VVLQSSLQPT CVPQISSQSM
0201: ELQQSDLQHM EVFQNSLQQA EAQHNIAAPI MPSGAMVMQP TDAKISSDSV QKEVKQEGVH SGVASEDKKF LESIFALMQK EETFSGQVKL MEWILQINNV
0301: TVLSRFVTMG GLTIMSTWLS QAAIEEQTSV IHVIFKVLLH LPLHKALPVH MSVVLQTINK LRFYRTQVDE IGTLLRLRGI VGFFDYKVAK SSLFGLLCSD
0401: SLIQCFFFFG LVIRTYLIPR SDISSRARNL LSRLSKVLVR IQALKKPQKD LICKQRISEI LRDESWKSEV DITEEVLALT DGANESRKPE PRKTPMLLTA
0501: SAIETNKRSS VQTKSKQKRK VLLVEQPNKK ATWKNANSVR NTSTNNSRPL SADDIQKAKM RAMFMQEKRG KIDINKLSDK PQAMDTKKAA GLVNSNPSAM
0601: PISPHTSAAQ PVDPSPSTSK QSTDPQPDNT EISGGLKLNI GSKNNVIEKL DCKRVLWQIP PAVWIDPSWS VGAGDNSKEL EVQTQRNRRE KETFYTSQKD
0701: VPMNPKDPWD LEMDFDDSLT PEVPIDQVPD VDAMETESVG AAPSAVAPVK DKQIESASST SGAVADDEEA NTDYELLTVL LRNPELVFAL TSNKGENMPN
0801: EQTIALLDTL KQTGLSLSEL VNRLGNGAGL PKEPEPEPEP IPASLPSPTP PDRTSRAVWI PEHAMQVRAA PTLHLPSRGS TPPVANAVQQ GFSNVVSSLP
0901: SQPYAPPVSV LPAQIQANAP PSLPLLAVSV NPPVQHVSPV NNLLNRASVH QHGQQQYALL SDPVATPLHQ QAAGSKPAVA AHPSLPEPNA SSHTAFPWQS
1001: NAADMTHAGR NATADPWAAA RAANSYSTAS ASTVPSANQN AYGDQGKQGA YSSYGSSAAS SRPVVPGHGH DRNGYSRSAL VEYPWDGHHQ RHSRSPDPGV
1101: VRDYDTDYGG AQGYSQQPLT QWSAGKVQQQ GYNPEPSRQW SSSQAHQGGY APAEPSRQWS SSQAHQSYAP ELPRQWSSER RGYDDAEPSR TWSSGQQNPE
1201: APRQWSRGKQ DPYYSPSHSR RSYDQHRRR
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.