Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G454600.1 | |
| TraesCS3B01G493200.1 | |
| TraesCS3D01G447300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | TraesCS3A01G454600.1 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | TraesCS3B01G493200.1 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | TraesCS3D01G447300.1 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G454600.1 | Wheat | nucleus | 95.82 | 95.97 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 93.85 | 94.15 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 86.91 | 89.38 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 42.19 | 82.69 |
| Os01t0934300-02 | Rice | nucleus | 57.26 | 73.41 |
| OQU88162 | Sorghum | nucleus | 58.28 | 64.32 |
| Zm00001d042212_P007 | Maize | nucleus | 57.49 | 59.32 |
| Solyc09g074690.2.1 | Tomato | nucleus | 12.3 | 50.65 |
| Solyc09g074700.1.1 | Tomato | nucleus | 2.21 | 47.46 |
| GSMUA_Achr11P... | Banana | plastid | 9.7 | 43.31 |
| Solyc09g074720.1.1 | Tomato | nucleus | 8.12 | 43.1 |
| Solyc09g074710.2.1 | Tomato | nucleus | 6.23 | 42.93 |
| CDX91289 | Canola | nucleus | 27.92 | 39.6 |
| CDX97277 | Canola | nucleus | 27.84 | 39.49 |
| Bra018540.1-P | Field mustard | nucleus | 25.16 | 39.24 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 29.81 | 39.05 |
| AT4G02560.1 | Thale cress | nucleus | 28.55 | 37.99 |
| KRH68148 | Soybean | nucleus | 28.94 | 35.84 |
| KRG96407 | Soybean | nucleus | 28.86 | 35.74 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 30.28 | 35.62 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 5.6 | 34.3 |
| GSMUA_Achr11P... | Banana | nucleus | 17.11 | 30.43 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G447300.1 | EnsemblPlantsGene:TraesCS3D01G447300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 |
| PFAM:PF00046 | PFscan:PS50071 | SEG:seg | SMART:SM00389 | SUPFAM:SSF46689 | TIGR:cd00086 |
| MapMan:15.5.3.9 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:555789869..555798593
Molecular Weight (calculated)
138239.0 Da
IEP (calculated)
6.868
GRAVY (calculated)
-0.669
Length
1268 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELAPFKPAA GALVEWGGAG SIPAMVAAQQ QQLHAQADQL QRLVVAQCRL TGVNPLAQEM AAGALSIKIG KKPRDLLNPK AVNSMQSLFA VKDTLGKRET
0101: REISALCGLT VTQVREFFAS QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTATNVCSL NTEQTPLDIE THAQVVEPLS TLEPLEMFQS SSQLAEAPQS
0201: SLQQPEVQQC TATPIPITPT GSIQPTDAKI NPDSVQKETK QEEVAPGVES EDKKFLDSIF ALMQKEETFS GQVKLMEWIL QINNATILSW FLTMGGLTIV
0301: STWLSQAATE EQTTVILVIF KVLLHLPLHK ALPAHMSVVL QTINRLRFYR TQDISGRARN LLSRLSKVLV RSQASKKPQK DLICKQRISE ILHDESWKSE
0401: VDITEEILAL TEGASESRKP EPKKTPLLLT ASADESYKKS PVQTKSKERR KVQLVEHPNR KAAGKNAHSA RGICTNNSRP LSADDIQKAK MRAMFMQEKY
0501: GKVDTSKVSD KPEMTENKKP SGLVNSNEPP MPRSPLTSTA KQPVDPSPST SIQNAVPLSD NPEILATPKL NIAPSETPIE KLDSKRVHWQ IPPEVWIDPS
0601: WSVSAGENSK ELDVQAQRNR REKETFYASP KDIPSNPKDP WDLEMDFDDS LTPEIPIEQP PDADTMEVDG VGAAPPNMVV PGEIQQVGST SSSSLTVSAG
0701: ANGAASEPDL ELLAVLLKNP QLVFALSSNE VGNLPTEQTV VLLDMLKQTG LGLSELVNSL PNGAGVPNKP EPVPETIPTS LPSPTPPKDL PASVGWRSDF
0801: PTHARAPNSQ QAHLPNNGNT PFASEVHQSF SNVVSPLPSQ PYTSVSALPA HIQSNAPSLQ SQSAISVNSL TQYAAPVNNM LDRTLVHQHT QPYGLASDHA
0901: AVAIHQQPAV NKPAHEFQNM SNSGLARSLT PEPNAAAYAT FPWQSGAANV VSTGRSTTPD QWADRVTNSF NDASAPYLNQ SAYSNQGLQS TYDAYGSSTS
1001: ASSQGLNRNG YIQTSEYQMS GRNVRQRHSL SPEPGSARVY GGTQGYIPES SKLGNYGQQS YNPPVASRDW SSGQQSYTPA EPSRDWSSGQ QSYTPAEPSR
1101: DWSSLQQSYT SAEPSRDRSS GQQGYTPAEP SRQWSSGQQS YTPAEPSRQW STGQQGYTPA EPSNQWSSGQ QGFTPAQPSN HRSSGQQGYT PAEPSRQWSS
1201: AQQGYNPSDP SVQQGYTPAE PSRPWSTASQ GAQNPDTSRQ WSGAGKQDYY APSDGRSPYD QRRRRRWE
0101: REISALCGLT VTQVREFFAS QRTRVRKAVR LSREKALKLE ASKTALKLEA SKTATNVCSL NTEQTPLDIE THAQVVEPLS TLEPLEMFQS SSQLAEAPQS
0201: SLQQPEVQQC TATPIPITPT GSIQPTDAKI NPDSVQKETK QEEVAPGVES EDKKFLDSIF ALMQKEETFS GQVKLMEWIL QINNATILSW FLTMGGLTIV
0301: STWLSQAATE EQTTVILVIF KVLLHLPLHK ALPAHMSVVL QTINRLRFYR TQDISGRARN LLSRLSKVLV RSQASKKPQK DLICKQRISE ILHDESWKSE
0401: VDITEEILAL TEGASESRKP EPKKTPLLLT ASADESYKKS PVQTKSKERR KVQLVEHPNR KAAGKNAHSA RGICTNNSRP LSADDIQKAK MRAMFMQEKY
0501: GKVDTSKVSD KPEMTENKKP SGLVNSNEPP MPRSPLTSTA KQPVDPSPST SIQNAVPLSD NPEILATPKL NIAPSETPIE KLDSKRVHWQ IPPEVWIDPS
0601: WSVSAGENSK ELDVQAQRNR REKETFYASP KDIPSNPKDP WDLEMDFDDS LTPEIPIEQP PDADTMEVDG VGAAPPNMVV PGEIQQVGST SSSSLTVSAG
0701: ANGAASEPDL ELLAVLLKNP QLVFALSSNE VGNLPTEQTV VLLDMLKQTG LGLSELVNSL PNGAGVPNKP EPVPETIPTS LPSPTPPKDL PASVGWRSDF
0801: PTHARAPNSQ QAHLPNNGNT PFASEVHQSF SNVVSPLPSQ PYTSVSALPA HIQSNAPSLQ SQSAISVNSL TQYAAPVNNM LDRTLVHQHT QPYGLASDHA
0901: AVAIHQQPAV NKPAHEFQNM SNSGLARSLT PEPNAAAYAT FPWQSGAANV VSTGRSTTPD QWADRVTNSF NDASAPYLNQ SAYSNQGLQS TYDAYGSSTS
1001: ASSQGLNRNG YIQTSEYQMS GRNVRQRHSL SPEPGSARVY GGTQGYIPES SKLGNYGQQS YNPPVASRDW SSGQQSYTPA EPSRDWSSGQ QSYTPAEPSR
1101: DWSSLQQSYT SAEPSRDRSS GQQGYTPAEP SRQWSSGQQS YTPAEPSRQW STGQQGYTPA EPSNQWSSGQ QGFTPAQPSN HRSSGQQGYT PAEPSRQWSS
1201: AQQGYNPSDP SVQQGYTPAE PSRPWSTASQ GAQNPDTSRQ WSGAGKQDYY APSDGRSPYD QRRRRRWE
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.