Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0934300-02 | |
| Os01t0934400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | Os01t0934300-02 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | Os01t0934400-01 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU88162 | Sorghum | nucleus | 68.35 | 58.83 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 73.91 | 57.83 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 73.41 | 57.35 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 73.41 | 57.26 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 70.78 | 56.77 |
| Zm00001d042212_P007 | Maize | nucleus | 67.75 | 54.52 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 34.18 | 52.24 |
| Solyc09g074690.2.1 | Tomato | nucleus | 15.87 | 50.97 |
| Solyc09g074700.1.1 | Tomato | nucleus | 2.83 | 47.46 |
| Solyc09g074710.2.1 | Tomato | nucleus | 8.29 | 44.57 |
| GSMUA_Achr11P... | Banana | plastid | 12.34 | 42.96 |
| Solyc09g074720.1.1 | Tomato | nucleus | 9.81 | 40.59 |
| Bra018540.1-P | Field mustard | nucleus | 31.24 | 38.01 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 37.01 | 37.81 |
| CDX91289 | Canola | nucleus | 32.86 | 36.35 |
| CDX97277 | Canola | nucleus | 32.76 | 36.24 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 7.58 | 36.23 |
| AT4G02560.1 | Thale cress | nucleus | 33.67 | 34.94 |
| KRH68148 | Soybean | nucleus | 35.59 | 34.38 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 37.41 | 34.32 |
| KRG96407 | Soybean | nucleus | 35.29 | 34.08 |
| GSMUA_Achr11P... | Banana | nucleus | 22.95 | 31.84 |
| Os01t0934400-01 | Rice | cytosol | 3.24 | 17.78 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.9 | UniProt:A0A0P0VCJ3 | ProteinID:BAS76068.1 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0010228 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | EnsemblPlantsGene:Os01g0934300 | EnsemblPlants:Os01t0934300-02 | PFAM:PF00046 | PFscan:PS50071 |
| PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000393AF2B | SEG:seg |
Description
Similar to Flowering-time protein isoform alpha. (Os01t0934300-01);Similar to Flowering-time protein isoform alpha. (Os01t0934300-02);Similar to Flowering-time protein isoform alpha. (Os01t0934300-03);Similar to Flowering-time protein isoform alpha. (Os01t0934300-04)
Coordinates
chr1:+:40984531..40992142
Molecular Weight (calculated)
107761.0 Da
IEP (calculated)
8.089
GRAVY (calculated)
-0.327
Length
989 amino acids
Sequence
(BLAST)
(BLAST)
001: MELVPFKPEA GALVESGGGA HGDSIPAMVA AQQELLHAQV DQLQLLVVAQ CRLTGVNPLA QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK
101: KETREISASF GVTVTQVREF FASQRTRVRK FVRLSREKAL RIESSKAPDN VCSISTEQTP VDIEAHAQVI EPLRTLEPLE AQQISLPHLV VPQISLQLPV
201: VLQSCAIPVA PIGVMQPTEA KTNPDPIQKE TKQEEVAGVE SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT
301: EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSKAR NLLSRLSKVL VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA
401: LTDDASESRM PEPRKTPLLL TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA KMRAMFMQEK YGKVDTSKVI
501: EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS TSKQSTLSPP DKPEIAVSLK LNVTAKENFI EKLDSKRVIW QIPPEVWIDP AWSLGAGENS
601: KEFEVQTQRN RREKETFYAS LKDIPLNPKG PWDVEMDFDD SLTPEIPIEQ PPDADAMETD SVSTAPPNIV VPVVDKQIGS TSSVSPAVAA GANGATSEPD
701: LELLAVLLKN PQLVFALTSN QGGTLPSEQT VALLDMLKQT GLGLSELVNS LANNSGVQKE PESGPEAIPA SLPSPTPPKD LIARDGWSSE FPSQVRTQNL
801: QHAHLPNRAN APPVASSVQQ SFSNVVSSLP SQPYASASAL PAQTRTNMTS LPQSMISVNP STQHVAPMNN LLSRATVHQH TQSYALTSDP VAVAVHHQPA
901: VNKLAHEVQS ISHPAVSHSS VAESHASYTS YTWQSSVATI AATGRNATPD RWAAPARTTN SFNAAPSNSN HVTYPNQNAY SNHSTQATT
101: KETREISASF GVTVTQVREF FASQRTRVRK FVRLSREKAL RIESSKAPDN VCSISTEQTP VDIEAHAQVI EPLRTLEPLE AQQISLPHLV VPQISLQLPV
201: VLQSCAIPVA PIGVMQPTEA KTNPDPIQKE TKQEEVAGVE SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT
301: EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSKAR NLLSRLSKVL VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA
401: LTDDASESRM PEPRKTPLLL TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA KMRAMFMQEK YGKVDTSKVI
501: EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS TSKQSTLSPP DKPEIAVSLK LNVTAKENFI EKLDSKRVIW QIPPEVWIDP AWSLGAGENS
601: KEFEVQTQRN RREKETFYAS LKDIPLNPKG PWDVEMDFDD SLTPEIPIEQ PPDADAMETD SVSTAPPNIV VPVVDKQIGS TSSVSPAVAA GANGATSEPD
701: LELLAVLLKN PQLVFALTSN QGGTLPSEQT VALLDMLKQT GLGLSELVNS LANNSGVQKE PESGPEAIPA SLPSPTPPKD LIARDGWSSE FPSQVRTQNL
801: QHAHLPNRAN APPVASSVQQ SFSNVVSSLP SQPYASASAL PAQTRTNMTS LPQSMISVNP STQHVAPMNN LLSRATVHQH TQSYALTSDP VAVAVHHQPA
901: VNKLAHEVQS ISHPAVSHSS VAESHASYTS YTWQSSVATI AATGRNATPD RWAAPARTTN SFNAAPSNSN HVTYPNQNAY SNHSTQATT
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.