Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g074690.2.1 | Tomato | nucleus | 43.51 | 33.77 |
| GSMUA_Achr11P... | Banana | plastid | 35.56 | 29.93 |
| CDX91289 | Canola | nucleus | 50.63 | 13.53 |
| CDX97277 | Canola | nucleus | 50.21 | 13.42 |
| AT4G02560.1 | Thale cress | nucleus | 51.46 | 12.91 |
| KRG96407 | Soybean | nucleus | 54.81 | 12.79 |
| KRH68148 | Soybean | nucleus | 53.56 | 12.5 |
| Bra018540.1-P | Field mustard | nucleus | 42.26 | 12.42 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 52.3 | 11.6 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 44.77 | 11.05 |
| Os01t0934300-02 | Rice | nucleus | 40.59 | 9.81 |
| OQU88162 | Sorghum | nucleus | 42.68 | 8.88 |
| Zm00001d042212_P007 | Maize | nucleus | 43.1 | 8.38 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 42.68 | 8.27 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 43.1 | 8.14 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 43.1 | 8.12 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 42.68 | 8.07 |
| Solyc09g074710.2.1 | Tomato | nucleus | 3.35 | 4.35 |
| GSMUA_Achr11P... | Banana | mitochondrion | 1.67 | 3.88 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 3.35 | 3.86 |
| GSMUA_Achr11P... | Banana | nucleus | 9.62 | 3.23 |
| Os01t0934400-01 | Rice | cytosol | 2.09 | 2.78 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 2.93 | 1.08 |
| Solyc09g074700.1.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc09g074720.1.1 | EnsemblPlantsGene:Solyc09g074720.1 | InterPro:IPR035441 | InterPro:TFIIS/LEDGF_dom_sf | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 |
| SUPFAM:SSF47676 | UniParc:UPI000276B599 | UniProt:K4CV49 | MapMan:15.5.3.9 | : | : |
Description
No Description!
Coordinates
chr9:+:66542381..66544624
Molecular Weight (calculated)
26918.1 Da
IEP (calculated)
8.349
GRAVY (calculated)
-0.484
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MDERDRHFVD NILTLMCKEE TFSGRVKLMD WILEVQNPSV LYWFLTKGGV MILSAWLSEA AGEEQTSVLH LILKVLCHLP LHKAFPGHMS AILQNVNSLR
101: FYRTPDISDR ARVLLERWSN IFAKSQAMTK HNGVKSASDM HDEMLLQQSI SEVVGDEIWN SKIEDVEEAH ANLCGTSENS RKLDSPQPVK LFMASSDDSN
201: KRLKGASKSS ANGTTKRKNN SKEPRKTSST CNSRPPTLS
101: FYRTPDISDR ARVLLERWSN IFAKSQAMTK HNGVKSASDM HDEMLLQQSI SEVVGDEIWN SKIEDVEEAH ANLCGTSENS RKLDSPQPVK LFMASSDDSN
201: KRLKGASKSS ANGTTKRKNN SKEPRKTSST CNSRPPTLS
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.