Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX91289 Canola nucleus 65.9 70.25
CDX97277 Canola nucleus 65.58 69.91
Bra018540.1-P Field mustard nucleus 57.19 67.04
Solyc09g074690.2.1 Tomato nucleus 18.15 56.17
Solyc09g074720.1.1 Tomato nucleus 12.91 51.46
Solyc09g074700.1.1 Tomato nucleus 3.04 49.15
Solyc09g074710.2.1 Tomato nucleus 9.44 48.91
GSMUA_Achr11P... Banana mitochondrion 4.93 45.63
GSMUA_Achr11P... Banana plastid 12.59 42.25
KRG96407 Soybean nucleus 43.13 40.14
KRH68148 Soybean nucleus 42.6 39.65
Solyc09g074730.1.1 Tomato mitochondrion 8.6 39.61
VIT_07s0104g01580.t01 Wine grape nucleus 42.29 37.38
Os01t0934300-02 Rice nucleus 34.94 33.67
GSMUA_Achr1P11230_001 Banana nucleus 33.26 32.75
OQU88162 Sorghum nucleus 35.36 29.33
TraesCS3D01G447300.1 Wheat nucleus 37.99 28.55
HORVU3Hr1G098230.5 Barley nucleus 36.83 28.47
TraesCS3B01G493200.1 Wheat nucleus 37.67 28.4
TraesCS3A01G454600.1 Wheat nucleus 37.67 28.36
Zm00001d042212_P007 Maize nucleus 34.42 26.69
GSMUA_Achr11P... Banana nucleus 18.15 24.26
HORVU7Hr1G104710.1 Barley cytosol 14.48 21.33
Os01t0934400-01 Rice cytosol 2.94 15.56
Protein Annotations
MapMan:15.5.3.9EntrezGene:827904ProteinID:AAC78261.1ProteinID:AAK00674.1ProteinID:AAX51265.1ProteinID:AEE82192.1
ProteinID:AEE82193.1EMBL:AK226746ArrayExpress:AT4G02560EnsemblPlantsGene:AT4G02560RefSeq:AT4G02560TAIR:AT4G02560
RefSeq:AT4G02560-TAIR-GEnsemblPlants:AT4G02560.1TAIR:AT4G02560.1Unigene:At.240ProteinID:CAB80749.1ProteinID:CAJ53827.1
ProteinID:CAJ53828.1ProteinID:CAJ53829.1ProteinID:CAJ53830.1ProteinID:CAJ53831.1ProteinID:CAJ53832.1ProteinID:CAJ53833.1
ProteinID:CAJ53834.1ProteinID:CAJ53835.1ProteinID:CAJ53836.1ProteinID:CAJ53837.1ProteinID:CAJ53838.1ProteinID:CAJ53839.1
ProteinID:CAJ53840.1ProteinID:CAJ53841.1ProteinID:CAJ53842.1ProteinID:CAJ53843.1ProteinID:CAJ53844.1ProteinID:CAJ53845.1
ProteinID:CAJ53846.1ProteinID:CAJ53847.1ProteinID:CAJ53848.1ProteinID:CAJ53849.1ProteinID:CAJ53850.1ProteinID:CAJ53851.1
ProteinID:CAJ53852.1ProteinID:CAJ53853.1ProteinID:CAJ53854.1ProteinID:CAJ53855.1ProteinID:CAJ53856.1ProteinID:CAJ53857.1
ProteinID:CAJ53858.1ProteinID:CAJ53859.1ProteinID:CAJ53860.1ProteinID:CAJ53861.1ProteinID:CAJ53862.1ProteinID:CAJ53863.1
ProteinID:CAJ53864.1ProteinID:CAJ53865.1ProteinID:CAJ53866.1ProteinID:CAJ53867.1ProteinID:CAJ53868.1ProteinID:CAJ53869.1
GO:GO:0000003GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006355GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009791
GO:GO:0009908GO:GO:0009987GO:GO:0010228GO:GO:0030154InterPro:Homeobox-like_sfInterPro:Homeobox_dom
InterPro:IPR001356InterPro:IPR035441Symbol:LDRefSeq:NP_001190660.1RefSeq:NP_192165.1PO:PO:0000013
PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025195PO:PO:0025281PFscan:PS50071PANTHER:PTHR33400PANTHER:PTHR33400:SF1
UniProt:Q38796SMART:SM00389SUPFAM:SSF46689SUPFAM:SSF47676InterPro:TFIIS/LEDGF_dom_sfEMBL:U03456
UniParc:UPI000016297ESEG:seg::::
Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
Coordinates
chr4:-:1123475..1128490
Molecular Weight (calculated)
105421.0 Da
IEP (calculated)
9.146
GRAVY (calculated)
-0.636
Length
953 amino acids
Sequence
(BLAST)
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.