Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plasma membrane 1
- plastid 1
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | mitochondrion | 14.94 | 44.66 |
| Solyc09g074720.1.1 | Tomato | nucleus | 33.77 | 43.51 |
| GSMUA_Achr11P... | Banana | plastid | 33.44 | 36.27 |
| Bra018540.1-P | Field mustard | nucleus | 54.55 | 20.66 |
| CDX91289 | Canola | nucleus | 54.55 | 18.79 |
| CDX97277 | Canola | nucleus | 54.55 | 18.79 |
| AT4G02560.1 | Thale cress | nucleus | 56.17 | 18.15 |
| KRG96407 | Soybean | nucleus | 60.06 | 18.07 |
| KRH68148 | Soybean | nucleus | 59.74 | 17.97 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 61.69 | 17.63 |
| Os01t0934300-02 | Rice | nucleus | 50.97 | 15.87 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 43.18 | 13.74 |
| OQU88162 | Sorghum | nucleus | 50.32 | 13.49 |
| Zm00001d042212_P007 | Maize | nucleus | 50.97 | 12.77 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 50.65 | 12.65 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 50.65 | 12.32 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 50.65 | 12.3 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 50.32 | 12.26 |
| Os01t0934400-01 | Rice | cytosol | 1.95 | 3.33 |
| Solyc09g074710.2.1 | Tomato | nucleus | 1.3 | 2.17 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 1.3 | 1.93 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 1.95 | 0.93 |
| GSMUA_Achr11P... | Banana | nucleus | 1.95 | 0.84 |
| Solyc09g074700.1.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc09g074690.2.1 | EnsemblPlantsGene:Solyc09g074690.2 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | PFscan:PS50071 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI000276B596 | UniProt:K4CV46 | MapMan:15.5.3.9 | : | : |
Description
No Description!
Coordinates
chr9:+:66516654..66521561
Molecular Weight (calculated)
34627.9 Da
IEP (calculated)
7.461
GRAVY (calculated)
-0.177
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MENQLQLALT SPTTPFSSLF ESQKEILNSQ IYQLQNIVVQ QCNLTGVNPL SQEMAAGALS IKIGKRPRDL LNPKAIKYMQ SIFSIKDAIN KKETREISAL
101: FGVTVTQVRD FFAAQRTRVR KFLRLSREKP ITTNLSIEGP IPLSSDPSSQ TEPVPLDSAV PISTEEGPSC STQDEVLTAM DERDRHFVDN ILTLMCKEET
201: FSGRVKLMDW ILEVQNPSVL YWFLTKGGVM ILSAWLSEAA GEEQTSVLHL ILKVLCHLPL HKAFPGHMSA ILQSVNSLRF YRTPDQISQT GQEFCLQDGA
301: RYLQRARL
101: FGVTVTQVRD FFAAQRTRVR KFLRLSREKP ITTNLSIEGP IPLSSDPSSQ TEPVPLDSAV PISTEEGPSC STQDEVLTAM DERDRHFVDN ILTLMCKEET
201: FSGRVKLMDW ILEVQNPSVL YWFLTKGGVM ILSAWLSEAA GEEQTSVLHL ILKVLCHLPL HKAFPGHMSA ILQSVNSLRF YRTPDQISQT GQEFCLQDGA
301: RYLQRARL
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.