Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr1P11230_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g074700.1.1 | Tomato | nucleus | 4.49 | 54.24 |
| Solyc09g074710.2.1 | Tomato | nucleus | 12.06 | 46.74 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 10.52 | 36.23 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 42.64 | 31.41 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 22.86 | 25.19 |
| Os01t0934300-02 | Rice | nucleus | 31.84 | 22.95 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 30.01 | 19.85 |
| KRH68148 | Soybean | nucleus | 28.33 | 19.73 |
| KRG96407 | Soybean | nucleus | 27.35 | 19.04 |
| Bra018540.1-P | Field mustard | nucleus | 21.04 | 18.45 |
| CDX91289 | Canola | nucleus | 22.86 | 18.23 |
| OQU88162 | Sorghum | nucleus | 29.31 | 18.19 |
| AT4G02560.1 | Thale cress | nucleus | 24.26 | 18.15 |
| CDX97277 | Canola | nucleus | 22.58 | 18.01 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 31.0 | 17.46 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 29.73 | 17.19 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 30.43 | 17.17 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 30.43 | 17.11 |
| Zm00001d042212_P007 | Maize | nucleus | 27.91 | 16.19 |
| Os01t0934400-01 | Rice | cytosol | 3.65 | 14.44 |
| Solyc09g074720.1.1 | Tomato | nucleus | 3.23 | 9.62 |
| GSMUA_Achr11P... | Banana | mitochondrion | 0.42 | 2.91 |
| Solyc09g074690.2.1 | Tomato | nucleus | 0.84 | 1.95 |
| GSMUA_Achr11P... | Banana | plastid | 0.7 | 1.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P11780_001 | EnsemblPlants:GSMUA_Achr11T11780_001 | EnsemblPlantsGene:GSMUA_Achr11G11780_001 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | SEG:seg |
| UniParc:UPI000295D3C1 | UniProt:M0RRF8 | MapMan:15.5.3.9 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G11780_001]
Coordinates
chr11:+:10663197..10671668
Molecular Weight (calculated)
77792.4 Da
IEP (calculated)
6.566
GRAVY (calculated)
-0.711
Length
713 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFLNDELL QAKLDIPEDI LALTEDAETT KTIEPKQTLK LLPASGADSS KKHDRSQLTE SKERRKVLLV EQPDHRAAGR SAQVVRAVSA NHSRPMSADD
101: IQKAKLRAMF MQHKYGKVDP SSSGSKLEKI EDPKALSASQ INNVLSECKA PQDPHLIKEG SSIRIVSTKD NLLSESETAI NSNSNSTSKQ DCLGMLNCKP
201: IQWKIPRETQ ISSTWSMGAG EDSKEFDVQT QRNQREKETF YSCLQDIPPN PKEPWDREMD FDDTLTPEIP TEQPPDADAE EGSSCAPIKD AEEAPASKAA
301: ADITCASPIS DGPPEPDLEL LAVLLKNPDL VFALTSNQGK SLTSEEMVVL LDMLKRNGVG LTGMLNELAH PKENSSHKTR SQEQEPPTSL PSPTPPSEAA
401: RSDWRSDFRA FSKTPVLQPH FSGNRTAAAL TSVVLQPPPA TVFPVVSGPQ TPGLVSPAQP PATISSVPEG MMMNDSTTRN LPPMSLLPTR TPAPSPPPQK
501: TSIRYPLQQT KVFNSDLPSK QYPVTKTTFI SSIPLQESLG HSRTTMSCLP ALPALPHNLQ RPQLLPKAEP SKVSPIPPTW PPVSGATKVV RQDTTAHQLI
601: SQPNGILEAA VPNQQYVPIQ NNYSTYPSGT VSQAHMLPGS LRGDRNGSLH GDGGSLGSTE FPAGWSYNDE SRRESRSNKM PEWSTENWDR YRSGGGGKRW
701: QDHGHGHGHG RQR
101: IQKAKLRAMF MQHKYGKVDP SSSGSKLEKI EDPKALSASQ INNVLSECKA PQDPHLIKEG SSIRIVSTKD NLLSESETAI NSNSNSTSKQ DCLGMLNCKP
201: IQWKIPRETQ ISSTWSMGAG EDSKEFDVQT QRNQREKETF YSCLQDIPPN PKEPWDREMD FDDTLTPEIP TEQPPDADAE EGSSCAPIKD AEEAPASKAA
301: ADITCASPIS DGPPEPDLEL LAVLLKNPDL VFALTSNQGK SLTSEEMVVL LDMLKRNGVG LTGMLNELAH PKENSSHKTR SQEQEPPTSL PSPTPPSEAA
401: RSDWRSDFRA FSKTPVLQPH FSGNRTAAAL TSVVLQPPPA TVFPVVSGPQ TPGLVSPAQP PATISSVPEG MMMNDSTTRN LPPMSLLPTR TPAPSPPPQK
501: TSIRYPLQQT KVFNSDLPSK QYPVTKTTFI SSIPLQESLG HSRTTMSCLP ALPALPHNLQ RPQLLPKAEP SKVSPIPPTW PPVSGATKVV RQDTTAHQLI
601: SQPNGILEAA VPNQQYVPIQ NNYSTYPSGT VSQAHMLPGS LRGDRNGSLH GDGGSLGSTE FPAGWSYNDE SRRESRSNKM PEWSTENWDR YRSGGGGKRW
701: QDHGHGHGHG RQR
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.