Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | KRG96407 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | KRH68148 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96407 | Soybean | nucleus | 91.5 | 91.5 |
| Solyc09g074690.2.1 | Tomato | nucleus | 17.97 | 59.74 |
| Solyc09g074700.1.1 | Tomato | nucleus | 3.32 | 57.63 |
| Solyc09g074720.1.1 | Tomato | nucleus | 12.5 | 53.56 |
| Solyc09g074710.2.1 | Tomato | nucleus | 9.57 | 53.26 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 50.39 | 47.87 |
| GSMUA_Achr11P... | Banana | mitochondrion | 4.69 | 46.6 |
| CDX91289 | Canola | nucleus | 39.16 | 44.85 |
| CDX97277 | Canola | nucleus | 39.06 | 44.74 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 8.79 | 43.48 |
| Bra018540.1-P | Field mustard | nucleus | 34.18 | 43.05 |
| GSMUA_Achr11P... | Banana | plastid | 11.91 | 42.96 |
| AT4G02560.1 | Thale cress | nucleus | 39.65 | 42.6 |
| Os01t0934300-02 | Rice | nucleus | 34.38 | 35.59 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 33.3 | 35.23 |
| OQU88162 | Sorghum | nucleus | 34.57 | 30.81 |
| Zm00001d042212_P007 | Maize | nucleus | 34.96 | 29.13 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 35.06 | 29.12 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 35.84 | 28.94 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 35.55 | 28.8 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 35.16 | 28.44 |
| GSMUA_Achr11P... | Banana | nucleus | 19.73 | 28.33 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 15.14 | 23.96 |
| Os01t0934400-01 | Rice | cytosol | 3.42 | 19.44 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100780237 | MapMan:15.5.3.9 | EMBL:ACUP02002102 | EnsemblPlantsGene:GLYMA_03G211500 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:K7KG97 | EnsemblPlants:KRH68148 |
| ProteinID:KRH68148 | ProteinID:KRH68148.1 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000295F6AC | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr3:+:41767799..41776251
Molecular Weight (calculated)
113886.0 Da
IEP (calculated)
9.506
GRAVY (calculated)
-0.684
Length
1024 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDAWNEDFSE LEIGSSTESF QKFLVSQREL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA GALSIKIGKR PRDLLNPKAV NYMQSVFSIK DAISKKELRE
0101: ISALLGVTVT QVRDFFNAQR SRVRRSVQLS RERALSSNSC EEPHDDQINS DPMRPINPTP LNSAGLSNTE EASCSTQEVT LSDLDDSDKQ FVDSIFSLMQ
0201: KEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGMNLATWL SKAAVEEQTS VLLLVLKVLC HLPLHKAVPM HISAILQSVN KLRFYRTSDI SNRARVLLSK
0301: WSKLFARNHV IKKPNGVKTS SDGHKEMMLS RSIGQLMGSE SWHSNIDVPE DILALSSECS NNFRKIGSPQ GVKLLPPSLD NSNKKSTLGV SSSQSRERRK
0401: VQLVEQPGQK SVSRSSQVTR AGPVSQGRPM SADDIQKAKM RALFMQSKYG KSGSKESSET KIDSPYKQPQ TNPASIAACS SKVPTPPKIE ENEKPLLLAS
0501: KATNKLEASY SKPKMDVKEP LWEKCKRVQI PWKTPAEVEL KDTWRVGGGE NSKEVEVQRN RNRRDKEIIY KTVQEMPPNP KEPWDLEMDY DDTLTLEIPI
0601: EQLPDGDADI AISPNHVATH SVQGVASTSS TSVATAEPDL ELLAVLLKNP ELVFALTSGQ GGSIPSEETV KLLDMIKSGG VNLGLSENTN GSYGTSVKAP
0701: EKVEVSLPSP TPLSDPRTSG WSSEASKNPF SRQSLAPDRI TQKHTAVATT NLLSQIPITV TTVRQQPTVV VPSSRHLTSI SVSPYSLPQA TNVIPEKPPP
0801: LGHVQTSSDV GLTMKKNLIT ANASSVNFTG THSTLAMRGD GTNYVKPVPN LSVQHEGLSN SFPQPFMPPS PTPSHSASQQ QRHQHLAQEV HYTEPPYRNP
0901: GRSYPPQIEK SDHGSDNMWR VRQDHVSSSY LSQRNHNNNY NTIVGGSRQS GFYDRNNHAR GEFESWSPEN SPTRNPRYAP GRNYPESRMN HGRNHRPEWS
1001: RQRGSSGHWD PGRQGNRKWH DQRR
0101: ISALLGVTVT QVRDFFNAQR SRVRRSVQLS RERALSSNSC EEPHDDQINS DPMRPINPTP LNSAGLSNTE EASCSTQEVT LSDLDDSDKQ FVDSIFSLMQ
0201: KEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGMNLATWL SKAAVEEQTS VLLLVLKVLC HLPLHKAVPM HISAILQSVN KLRFYRTSDI SNRARVLLSK
0301: WSKLFARNHV IKKPNGVKTS SDGHKEMMLS RSIGQLMGSE SWHSNIDVPE DILALSSECS NNFRKIGSPQ GVKLLPPSLD NSNKKSTLGV SSSQSRERRK
0401: VQLVEQPGQK SVSRSSQVTR AGPVSQGRPM SADDIQKAKM RALFMQSKYG KSGSKESSET KIDSPYKQPQ TNPASIAACS SKVPTPPKIE ENEKPLLLAS
0501: KATNKLEASY SKPKMDVKEP LWEKCKRVQI PWKTPAEVEL KDTWRVGGGE NSKEVEVQRN RNRRDKEIIY KTVQEMPPNP KEPWDLEMDY DDTLTLEIPI
0601: EQLPDGDADI AISPNHVATH SVQGVASTSS TSVATAEPDL ELLAVLLKNP ELVFALTSGQ GGSIPSEETV KLLDMIKSGG VNLGLSENTN GSYGTSVKAP
0701: EKVEVSLPSP TPLSDPRTSG WSSEASKNPF SRQSLAPDRI TQKHTAVATT NLLSQIPITV TTVRQQPTVV VPSSRHLTSI SVSPYSLPQA TNVIPEKPPP
0801: LGHVQTSSDV GLTMKKNLIT ANASSVNFTG THSTLAMRGD GTNYVKPVPN LSVQHEGLSN SFPQPFMPPS PTPSHSASQQ QRHQHLAQEV HYTEPPYRNP
0901: GRSYPPQIEK SDHGSDNMWR VRQDHVSSSY LSQRNHNNNY NTIVGGSRQS GFYDRNNHAR GEFESWSPEN SPTRNPRYAP GRNYPESRMN HGRNHRPEWS
1001: RQRGSSGHWD PGRQGNRKWH DQRR
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.