Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | CDX91289 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | CDX97277 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97277 | Canola | nucleus | 98.88 | 98.88 |
| Bra018540.1-P | Field mustard | nucleus | 71.92 | 79.09 |
| AT4G02560.1 | Thale cress | nucleus | 70.25 | 65.9 |
| Solyc09g074690.2.1 | Tomato | nucleus | 18.79 | 54.55 |
| Solyc09g074720.1.1 | Tomato | nucleus | 13.53 | 50.63 |
| Solyc09g074700.1.1 | Tomato | nucleus | 3.24 | 49.15 |
| Solyc09g074710.2.1 | Tomato | nucleus | 9.62 | 46.74 |
| GSMUA_Achr11P... | Banana | mitochondrion | 5.37 | 46.6 |
| GSMUA_Achr11P... | Banana | plastid | 13.31 | 41.9 |
| KRG96407 | Soybean | nucleus | 45.53 | 39.75 |
| KRH68148 | Soybean | nucleus | 44.85 | 39.16 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 8.84 | 38.16 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 44.85 | 37.2 |
| Os01t0934300-02 | Rice | nucleus | 36.35 | 32.86 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 34.45 | 31.82 |
| OQU88162 | Sorghum | nucleus | 36.24 | 28.2 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 39.6 | 27.92 |
| HORVU3Hr1G098230.5 | Barley | nucleus | 38.37 | 27.82 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 39.26 | 27.77 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 39.15 | 27.65 |
| Zm00001d042212_P007 | Maize | nucleus | 35.46 | 25.79 |
| GSMUA_Achr11P... | Banana | nucleus | 18.23 | 22.86 |
| HORVU7Hr1G104710.1 | Barley | cytosol | 15.77 | 21.79 |
| Os01t0934400-01 | Rice | cytosol | 3.24 | 16.11 |
Protein Annotations
| EnsemblPlants:CDX91289 | EnsemblPlantsGene:GSBRNA2T00152536001 | GO:A0A078DRY8 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR035441 | InterPro:TFIIS/LEDGF_dom_sf | PANTHER:PTHR33400 |
| PANTHER:PTHR33400:SF1 | ProteinID:CDX91289 | ProteinID:CDX91289.1 | SEG:seg | SMART:SM00389 | SUPFAM:SSF47676 |
| UniParc:UPI0004EE3895 | MapMan:15.5.3.9 | : | : | : | : |
Description
BnaC02g27000D
Coordinates
chrLK031866:-:1231479..1236905
Molecular Weight (calculated)
99455.0 Da
IEP (calculated)
9.453
GRAVY (calculated)
-0.644
Length
894 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDAFKEEIE IGSSVESLME LLNSQKELFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA LSIQIGKRPR DLLNPKAVKY MQSLFAIKDS ISKKESREIS
101: ALFGISVAQV RDFVVTQKIK VRKQVRLSKE KVMMSSTHAI QGDGVPEQNN AVPHADPVPL NSMDPEPSSI SWGETENVAL MPKEEVQQED IPPDISDSDK
201: YFVDNIFSML RKEETFSGQV KLMEWIMQIQ DSSVLIWFLS KGGVLILTTW LSQAATEEQT SVLLLILKVL CHLPLHKASP ENMSAILQSV NGLRFYRTSD
301: ISNRAKGLLS RWTKLFAKIQ AMKKQNRNIS QIDSQSQLLL KQRQVVVYAI AEIMGDKTNP EDILSLSNGR SDNGRRLKSL QGPKLLLTSA DDSTRKHMLG
401: STPSYNKERR KVQMVEQPGQ KAAGRGPQTV RIGTSGRSRP MSADDIQKAK MRAQYMNSKN IKKDTLPSAI DTPEPSAVQQ PVTVNVPVQT VSSPAVNVPV
501: QADEFRNRKL STPPKSISSK VGVMLRMSPH TILKNCKRKQ IEWHVPPGMV LDELWRVAAG ANSKEADVQK NRNRREKETT YQSLQTIPLN PKEPWDREMD
601: FDDSLTPEIP SQQPQEESIT EQQDSLDERR TAAGAASTSS SQSGSVEPDY ELLAALLKNP DLLYALTSGN PGNLAGKDMV KLLDVIKTGA PNLSSSSNKK
701: VEENVEVSLP SPTPSTNPGM SGWGQEVTRN PFSRQTQVGA SVARMSTQLP VAASMQWQSS NGQSIPQHTP SAYNSFTLPH TERQQQPMQT RLHQSQHLQQ
801: QPISMVSESV GQMDIGTSAS WRSQQSQNSY YSHQANGIGS AASYQGNEQY MSSSNPGYES WSPDHSPSRN HPNMRGQQPS RKHDPYLNQN KRWR
101: ALFGISVAQV RDFVVTQKIK VRKQVRLSKE KVMMSSTHAI QGDGVPEQNN AVPHADPVPL NSMDPEPSSI SWGETENVAL MPKEEVQQED IPPDISDSDK
201: YFVDNIFSML RKEETFSGQV KLMEWIMQIQ DSSVLIWFLS KGGVLILTTW LSQAATEEQT SVLLLILKVL CHLPLHKASP ENMSAILQSV NGLRFYRTSD
301: ISNRAKGLLS RWTKLFAKIQ AMKKQNRNIS QIDSQSQLLL KQRQVVVYAI AEIMGDKTNP EDILSLSNGR SDNGRRLKSL QGPKLLLTSA DDSTRKHMLG
401: STPSYNKERR KVQMVEQPGQ KAAGRGPQTV RIGTSGRSRP MSADDIQKAK MRAQYMNSKN IKKDTLPSAI DTPEPSAVQQ PVTVNVPVQT VSSPAVNVPV
501: QADEFRNRKL STPPKSISSK VGVMLRMSPH TILKNCKRKQ IEWHVPPGMV LDELWRVAAG ANSKEADVQK NRNRREKETT YQSLQTIPLN PKEPWDREMD
601: FDDSLTPEIP SQQPQEESIT EQQDSLDERR TAAGAASTSS SQSGSVEPDY ELLAALLKNP DLLYALTSGN PGNLAGKDMV KLLDVIKTGA PNLSSSSNKK
701: VEENVEVSLP SPTPSTNPGM SGWGQEVTRN PFSRQTQVGA SVARMSTQLP VAASMQWQSS NGQSIPQHTP SAYNSFTLPH TERQQQPMQT RLHQSQHLQQ
801: QPISMVSESV GQMDIGTSAS WRSQQSQNSY YSHQANGIGS AASYQGNEQY MSSSNPGYES WSPDHSPSRN HPNMRGQQPS RKHDPYLNQN KRWR
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.