Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G098230.5 | |
| HORVU7Hr1G104710.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02560.1 | HORVU3Hr1G098230.5 | AT4G02560.1 | 17138694 |
| AT4G02560.1 | HORVU7Hr1G104710.1 | AT4G02560.1 | 17138694 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G104710.1 | Barley | cytosol | 47.77 | 91.04 |
| TraesCS3D01G447300.1 | Wheat | nucleus | 89.38 | 86.91 |
| TraesCS3B01G493200.1 | Wheat | nucleus | 88.48 | 86.31 |
| TraesCS3A01G454600.1 | Wheat | nucleus | 88.32 | 86.02 |
| Os01t0934300-02 | Rice | nucleus | 56.77 | 70.78 |
| OQU88162 | Sorghum | nucleus | 58.56 | 62.84 |
| Zm00001d042212_P007 | Maize | nucleus | 57.18 | 57.36 |
| Solyc09g074690.2.1 | Tomato | nucleus | 12.65 | 50.65 |
| Solyc09g074700.1.1 | Tomato | nucleus | 2.11 | 44.07 |
| GSMUA_Achr11P... | Banana | plastid | 10.06 | 43.66 |
| Solyc09g074710.2.1 | Tomato | nucleus | 6.41 | 42.93 |
| Solyc09g074720.1.1 | Tomato | nucleus | 8.27 | 42.68 |
| GSMUA_Achr1P11230_001 | Banana | nucleus | 30.58 | 38.95 |
| CDX91289 | Canola | nucleus | 27.82 | 38.37 |
| CDX97277 | Canola | nucleus | 27.74 | 38.26 |
| Bra018540.1-P | Field mustard | nucleus | 24.98 | 37.88 |
| AT4G02560.1 | Thale cress | nucleus | 28.47 | 36.83 |
| KRH68148 | Soybean | nucleus | 29.12 | 35.06 |
| KRG96407 | Soybean | nucleus | 29.03 | 34.96 |
| Solyc09g074730.1.1 | Tomato | mitochondrion | 5.84 | 34.78 |
| VIT_07s0104g01580.t01 | Wine grape | nucleus | 30.17 | 34.51 |
| GSMUA_Achr11P... | Banana | nucleus | 17.19 | 29.73 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.9 | UniProt:A0A287MGD2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:HORVU3Hr1G098230 | EnsemblPlants:HORVU3Hr1G098230.5 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| PFscan:PS50071 | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF1 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000B477B51 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:657980060..657989055
Molecular Weight (calculated)
134818.0 Da
IEP (calculated)
7.332
GRAVY (calculated)
-0.651
Length
1233 amino acids
Sequence
(BLAST)
(BLAST)
0001: GGAGSIPAMV AAQQQQLHAQ ADQLQRLVVA QCRLTGVNPL AQEMAAGALS IKIGKKPRDL LNPKAVNSMQ SLFAVKDTLG KRETREISAL CGLTVTQVRE
0101: FFASQRTRVR KAVRLSREKA LKLEASKTTL KLEASKTANN VCSLNTEPPP LDIETHAQVV EPLSTLEPLE MFQSSSQLVE VPQSSLQQPE VQQCTATPIP
0201: ITPTGTIQPT DAKINPDSVQ KETKQEEVAP GVESEDKKFL DSIFALMRKE ETFSGQVKLM EWILQINNAT ILGWFLTMGG LTIVSTWLSQ AATEEQTTVI
0301: LVIFKVLLHL PLHKALPAHM SVVLQTINRL RFYRTQDISG RARNLLSRLS KVLVRSQASK KPQKDLICKQ RISEILHDES WRSEVDITEE ILALTEVGSE
0401: SRKPEPKKTP LLLTASVDEA YKKSPVQTKS KERRKVLLVE HPNRKAAGKN AHSARSMCTN NSRPLSADDI QKAKKRAMFM QEKYGKVDTS KVSDKPETTE
0501: NKKPSGLVNS NVPPMPTSPL TSTAKQPVDP SPSTSIQNAV PLLDNPEILA SPKLNIAPRE TPIEKLDSKR VRWQIPPEVW IDPLWSVSAG ENSKEVDVQA
0601: QRNRREKETF YASPKDIPSN PKDPWDLEMN FDDSLTLEIP IDQPPDADTM EVDGAGAAPP NIVVPGEIQQ VGSTSSSLTV AAGANGSASE PDLELLAVLL
0701: KNPQLVFALS SNEVGNLPTE QTVALLDMLK QTGLGLSELV NCLPNGAGVP NEPEPGPETI PTSLPSPTPP KDLPASVCWR SNFPTHARAS NSQQANLPNN
0801: GHTPFASEVH QSFSNVVSPL PSQPYTSVSA LPAHIQSNAP SVPPQSAVSV NSLTQYAAPV NNMLDSTSVH QHNQPYGFAS DRAAVAIHQQ PAVDKPAHEF
0901: QNMSNSTLAR SLTPEPNAAY ATFPWQSGAA NVASTGRSTT PDHWADSVTN SFNDASAPYL NQSAYSNQSM QSTYDAYGSS TSVSSQGLGR NGYSQTSEYQ
1001: MSGRNVRQRH SLSPEPGSAR VYGGTQEYIP EPSNLADYGQ HRYNPVASRD WSSGQQSYTP AEPSRDWNSG QQSYTPAEPS RDWSSVQQSY TSAELSRGRS
1101: SGQQGYTSAE LSRDRSSGQQ VYVPAEPSRQ WSSGQQSYTP AEPSNKWSSG QQGHTPAEPS RQWSSAQQGY TPSDLSSQKG YTPTEPSRSR STASQWVQNP
1201: ETSRQWSGAG KQDYYAPSDG RSPYDQRRRR RWE
0101: FFASQRTRVR KAVRLSREKA LKLEASKTTL KLEASKTANN VCSLNTEPPP LDIETHAQVV EPLSTLEPLE MFQSSSQLVE VPQSSLQQPE VQQCTATPIP
0201: ITPTGTIQPT DAKINPDSVQ KETKQEEVAP GVESEDKKFL DSIFALMRKE ETFSGQVKLM EWILQINNAT ILGWFLTMGG LTIVSTWLSQ AATEEQTTVI
0301: LVIFKVLLHL PLHKALPAHM SVVLQTINRL RFYRTQDISG RARNLLSRLS KVLVRSQASK KPQKDLICKQ RISEILHDES WRSEVDITEE ILALTEVGSE
0401: SRKPEPKKTP LLLTASVDEA YKKSPVQTKS KERRKVLLVE HPNRKAAGKN AHSARSMCTN NSRPLSADDI QKAKKRAMFM QEKYGKVDTS KVSDKPETTE
0501: NKKPSGLVNS NVPPMPTSPL TSTAKQPVDP SPSTSIQNAV PLLDNPEILA SPKLNIAPRE TPIEKLDSKR VRWQIPPEVW IDPLWSVSAG ENSKEVDVQA
0601: QRNRREKETF YASPKDIPSN PKDPWDLEMN FDDSLTLEIP IDQPPDADTM EVDGAGAAPP NIVVPGEIQQ VGSTSSSLTV AAGANGSASE PDLELLAVLL
0701: KNPQLVFALS SNEVGNLPTE QTVALLDMLK QTGLGLSELV NCLPNGAGVP NEPEPGPETI PTSLPSPTPP KDLPASVCWR SNFPTHARAS NSQQANLPNN
0801: GHTPFASEVH QSFSNVVSPL PSQPYTSVSA LPAHIQSNAP SVPPQSAVSV NSLTQYAAPV NNMLDSTSVH QHNQPYGFAS DRAAVAIHQQ PAVDKPAHEF
0901: QNMSNSTLAR SLTPEPNAAY ATFPWQSGAA NVASTGRSTT PDHWADSVTN SFNDASAPYL NQSAYSNQSM QSTYDAYGSS TSVSSQGLGR NGYSQTSEYQ
1001: MSGRNVRQRH SLSPEPGSAR VYGGTQEYIP EPSNLADYGQ HRYNPVASRD WSSGQQSYTP AEPSRDWNSG QQSYTPAEPS RDWSSVQQSY TSAELSRGRS
1101: SGQQGYTSAE LSRDRSSGQQ VYVPAEPSRQ WSSGQQSYTP AEPSNKWSSG QQGHTPAEPS RQWSSAQQGY TPSDLSSQKG YTPTEPSRSR STASQWVQNP
1201: ETSRQWSGAG KQDYYAPSDG RSPYDQRRRR RWE
001: MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
101: LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
201: FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
301: GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
401: QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
501: NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
601: VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
701: KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
801: QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
901: NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK RWR
Arabidopsis Description
LDHomeobox protein LUMINIDEPENDENS [Source:UniProtKB/Swiss-Prot;Acc:Q38796]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.