Factsheet for VIT_12s0059g02260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052390.2.1	Tomato	nucleus	61.94	64.94
KRH22563	Soybean	plasma membrane	64.14	64.14
PGSC0003DMT400065543	Potato	plasma membrane	63.7	63.63
KRH26791	Soybean	plasma membrane	63.59	63.59
GSMUA_Achr5P00740_001	Banana	plasma membrane	55.34	58.56
AT2G32400.1	Thale cress	plasma membrane	55.45	54.72
Bra005591.1-P	Field mustard	plasma membrane	55.45	54.66
CDY48270	Canola	plasma membrane	55.23	54.45
CDY12210	Canola	plasma membrane	55.12	54.4
CDY15337	Canola	plasma membrane	53.03	53.91
CDX84734	Canola	plasma membrane	54.79	53.78
CDY66699	Canola	plasma membrane	54.79	53.78
VIT_12s0059g02270.t01	Wine grape	plasma membrane	52.37	51.52
VIT_18s0122g00990.t01	Wine grape	plasma membrane	50.27	48.93
VIT_07s0031g02170.t01	Wine grape	plasma membrane	49.39	47.97
VIT_03s0038g03920.t01	Wine grape	plasma membrane	47.74	47.33
VIT_04s0069g00560.t01	Wine grape	plasma membrane	32.56	33.04
VIT_04s0069g00670.t01	Wine grape	plasma membrane	32.45	32.1
VIT_04s0069g00390.t01	Wine grape	mitochondrion, plasma membrane	28.93	31.76
VIT_04s0069g00260.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	19.14	31.35
VIT_04s0069g00010.t01	Wine grape	mitochondrion, plasma membrane	29.48	30.95
VIT_04s0069g00170.t01	Wine grape	plasma membrane	31.13	30.56
VIT_04s0069g00540.t01	Wine grape	plasma membrane	23.65	30.41
VIT_11s0052g01020.t01	Wine grape	plasma membrane	30.36	30.33
VIT_04s0069g00200.t01	Wine grape	cytosol	14.52	29.93
VIT_04s0069g00620.t01	Wine grape	plasma membrane	32.56	29.9
VIT_04s0069g00060.t01	Wine grape	plasma membrane	32.12	29.83
VIT_10s0003g00790.t01	Wine grape	plasma membrane	29.59	29.37
VIT_04s0069g00380.t01	Wine grape	cytosol	13.09	29.02
VIT_04s0069g00230.t01	Wine grape	plasma membrane	31.57	28.05
VIT_19s0014g01830.t01	Wine grape	plasma membrane	23.21	27.47
VIT_04s0069g00720.t01	Wine grape	cytosol	17.82	27.14
Bra022887.1-P	Field mustard	plasma membrane	54.79	26.82
VIT_10s0003g00760.t01	Wine grape	plasma membrane	27.72	24.8
VIT_19s0014g01760.t01	Wine grape	plasma membrane	25.52	20.81
VIT_04s0069g00330.t01	Wine grape	plastid	31.9	16.48
VIT_19s0014g01770.t01	Wine grape	cytosol	26.95	15.5

Protein Annotations

Gene3D:1.10.287.70	EntrezGene:100255191	wikigene:100255191	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300
InterPro:ANF_lig-bd_rcpt	ProteinID:CCB52041	ProteinID:CCB52041.1	UniProt:F6HIJ5	EMBL:FN595765	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	EntrezGene:LOC100255191
wikigene:LOC100255191	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090	PRINTS:PR01176
PANTHER:PTHR43891	PANTHER:PTHR43891:SF15	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850
SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TIGR:TC58207	TMHMM:TMhelix	UniParc:UPI00015CB1E0	ArrayExpress:VIT_12s0059g02260
EnsemblPlantsGene:VIT_12s0059g02260	EnsemblPlants:VIT_12s0059g02260.t01	unigene:Vvi.7081	RefSeq:XP_002273713	RefSeq:XP_002273713.1	SEG:seg

Description

Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:F6HIJ5]

Coordinates

chr12:+:7057021..7062635

Molecular Weight (calculated)

102426.0 Da

IEP (calculated)

8.801

GRAVY (calculated)

0.005

Length

909 amino acids

Sequence
(BLAST)

001: MRHVVALPLA LWVWVIFHGS VLCQRPAVVN IGAVFTFDSV IGRPAKVAMK VAVSDVNSDP RILNGTELNL IMGDAKCSVF MGCIAAFQVL ERQVLAIIGP
101: QSSSIAHMIS QIANGLQVPQ ISYAATDPTL SALQFPFFLR TTHSDSYQMA AMADLIDYYG WKEVIVIFVD DDYGRNGMAA LDDELEKRGS KISYKLPLPT
201: EFNVRDFTEM LNKSKLIGPR VYVVHVNPDP SFRIFSIAQK LQMMTRGYVW FATDWLCATL DSFSPMNQTS LRFLQGVVGL RQHIPQSRKK DAFVSQWRKM
301: QKKGLVSSGL NTYGLYAYDT VWAVAYAIDK FLKENGNMSF SESDKLHDMR ATQFGKLEVF ENGNFLREQL LQINFTGLTG RIQFDPERNV MNGSYDVINI
401: VHTEIRGVGY WSNYSGLSVL PPEDLKGEQN RNSLLDQKLR IVTWPGGITE KPRGWEIAAN ERPLRLGIPK RTSFVDFVTE LNTSHKVQGY CIDVFNAALK
501: LVPYNVPHTF IPFGDGRSNP HYDELVQKVA DDVFDGVVGD VAIVTNRTRI VDFTQPYAAT GLVIVAPVHN TKLSAWVFLK PFTVEMWCVT AAAFVMIAVV
601: IWILEHRVND DFRGPPKRQL ITMFLFSFST LFKTNQEDTR STLGRIVMVV WLFLLMVITS SYTASLTSIL TVQQLSSPIT GIDSLIASDL PIGYQVGSFA
701: FSYLRDSLYV HQSRLVSLGS PEAYEMALRK GPKGGGVAAI VDELPYVELF LEKQKDFGVF GQTFTKSGWG FAFQKDSPLA ADLSTAILRL SETGTLQKIH
801: ENWFCKMGCP GWRRRKSEPN QLHMISFWGL YLLCGSITLI ALLVFLLRTI RQFARYKRKK PIQIGDSPSV SSNTRCSQVI YNFFDFIDEK EEAIKKMFKQ
901: QENPQPQVS

Best Arabidopsis Sequence Match ( AT2G32400.1 )
(BLAST)

001: MGLGIDPSVA ITALIVVILV VPMDCQRPQL VNIGAVFAFD SVIGRAAKVA LEAAVSDVNN DKSFLKETEL RLLMEDSACN VFRGSFGAFE LLEKEVVAMI
101: GPISSSVAHT ISDIAKGLHF PLVSFAATDP TLSALQFPFF LRTTPNDAHQ MSALVDLINF YGWKEVISVY SDDELGRNGV SALDDELYKK RSRISYKVPL
201: SVHSDEKFLT NALNKSKSIG PRVYILHFGP DPLLRIFDIA QKLQMMTHEY VWLATDWLSV TLDSLSDKGT LKRLEGVVGL RQHIPESVKM EHFTHKLQSN
301: RSMNAYALHA YDTVWMIAHG IEELLNEGIN ITFSYSEKLL HARGTKLHLE KIKFFNSGEL LLEKLLKVNF TGIAGQVQFG SGRNVIGCDY EIINVNKTDV
401: HTVGFWSKNG GFSVVAPKTR HSQKKTSFVS DEKLGDITWP GGGREKPRGW VIADSADPLK IVVPRRVSFV EFVTEEKNSS HRIQGFCIDV FIEALKFVPY
501: SVPYIFEPFG NGHSSPNYNH LIQMVTDGVY DAAVGDIAIV PSRSKLVDFS QPYASTGLVV VIPANDDNAT WIFLRPFTSR LWCVVLVSFL VIAVVIWILE
601: HRINEDFRGP PRRQLSTMLL FSFSTLFKRN QEDTISNLAR LVMIVWLFLL MVLTASYTAN LTSILTVQQL PSAITGIDSL RASEVPIGYQ AGTFTLEYLT
701: YSLGMARSRL VPLDSTEEYE KALKLGPTNW GGVAAIVDEL PYIELFLAER TGFKIVGEPF MHRGWGFAFK RDSPLAIDMS TAILKLSETR KLQEIRKKWL
801: CKTNCAGKSN WNPEPNQLHL KSFKGLYLVC IAITVSAFLV FVLRMIRQFV RYRRMERTSS MPRASWSASP TLRLRELVFD FVEFVDEKEE AIKRMFRRSD
901: DSNNNPSHVG EVQADTEVPR N

Arabidopsis Description

GLR3.7Glutamate receptor 3.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.