Factsheet for VIT_19s0014g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01830.t01	Wine grape	plasma membrane	33.45	48.57
VIT_10s0003g00790.t01	Wine grape	plasma membrane	26.64	32.42
VIT_04s0069g00390.t01	Wine grape	mitochondrion, plasma membrane	23.95	32.25
VIT_19s0014g01770.t01	Wine grape	cytosol	44.48	31.37
VIT_04s0069g00560.t01	Wine grape	plasma membrane	24.93	31.03
VIT_04s0069g00170.t01	Wine grape	plasma membrane	25.11	30.24
VIT_04s0069g00670.t01	Wine grape	plasma membrane	24.84	30.14
VIT_04s0069g00010.t01	Wine grape	mitochondrion, plasma membrane	23.23	29.91
VIT_10s0003g00760.t01	Wine grape	plasma membrane	26.28	28.84
VIT_04s0069g00060.t01	Wine grape	plasma membrane	25.02	28.5
VIT_04s0069g00260.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	14.08	28.29
VIT_04s0069g00620.t01	Wine grape	plasma membrane	25.02	28.18
VIT_04s0069g00230.t01	Wine grape	plasma membrane	25.65	27.96
VIT_11s0052g01020.t01	Wine grape	plasma membrane	22.51	27.58
VIT_04s0069g00540.t01	Wine grape	plasma membrane	17.31	27.3
VIT_12s0059g02270.t01	Wine grape	plasma membrane	21.43	25.87
VIT_04s0069g00380.t01	Wine grape	cytosol	9.51	25.85
VIT_04s0069g00200.t01	Wine grape	cytosol	10.22	25.85
VIT_04s0069g00720.t01	Wine grape	cytosol	13.81	25.8
VIT_18s0122g00990.t01	Wine grape	plasma membrane	21.52	25.7
VIT_12s0059g02260.t01	Wine grape	plasma membrane	20.81	25.52
VIT_03s0038g03920.t01	Wine grape	plasma membrane	20.63	25.08
VIT_07s0031g02170.t01	Wine grape	plasma membrane	19.91	23.72
VIT_04s0069g00330.t01	Wine grape	plastid	25.65	16.25

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	ProteinID:CCB46282
ProteinID:CCB46282.1	UniProt:F6H1Y6	EMBL:FN595229	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023
InterPro:Iontro_rcpt	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PANTHER:PTHR43891	PANTHER:PTHR43891:SF1
InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix
UniParc:UPI00021097E7	ArrayExpress:VIT_19s0014g01760	EnsemblPlantsGene:VIT_19s0014g01760	EnsemblPlants:VIT_19s0014g01760.t01	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:1908116..1925741

Molecular Weight (calculated)

124427.0 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.105

Length

1115 amino acids

Sequence
(BLAST)

0001: MKAVAAIIGS WGWRRINVIY EDTNSAGSEI IPFLADALKQ VGSEIGYLAA LPPSSAVNSS SLSDQLQRLK GKQSQVFVVH SSLSMAERVF SKANELGMME
0101: KGSVWITTDS ITNLVHSMNS SIISSMEGVL GMKSFFQEDG ARFQDFYSRF RQKFRSLYPK EDNHEPGIFA VRAYDAVWSV ALAMDNNGST QQLLEKIELS
0201: DFHGLTNRIK FERRRLAPQR MFQIVNVIGK SYRELGFWSE GSGFAKPTNG QIQNSSSMDI LGQVFWPGGL ISTPRGWVLP TSETPLRIGV PLNATFKQFV
0301: SVTYDDGGNP SVSGFSIEVF KAVLKHLNYI LPYEFFPFSG IYDDLVEQVH LKDIPSSATG AVLQLSEALK NVGIEIGHLL PLPPLSSSSS LVEEPQSLKE
0401: GQCRVFVVHT SLQLGVHLFE TAKKMEMMKE VYVWIITDTI SSLVHSVKAS TISSSMDGIV GVKSYFNETT PQFKIFRGRF RRKFISEHPD EEKNEPGIYA
0501: AKAYDATWAA ALAMKGGRDF YSRFRQKFRS LYPKEDNYEP GIFAVRAYDA VWSVALAMDN NGSTQQLLEK IELSDFHGLT NRIKFERRRL APQRMFQIVN
0601: VIGKSYRELG FWSEGSGFAK PTNGQIQNSS SMDILGQVFW PGGPTSTPRG WALPTSETPL RIGVPLNATF KQFVSVTYDD GGNPSVSGFS IEVFKAVLKH
0701: LNYSLPHEFF PFSGTYDDLV EQVHLKKFDA VVGDTSIVSK RWELAEFSHP YTEPGLMMIV PEKVETSNRA WLFMKPFTKA MWVLTGAITI YNGFTLWLIE
0801: RNQNPELMTG SILNQMGTLV CLSFTTLFSM HGRQHSNLSR LVMVVWLFAS LVITNSYTAN LTSMLTVQRL EPTVVDVEDL KSANSIVGCS GRSFVVRYLV
0901: DVIRIKESNI KDITSAEEYA PALRSGEIAA AFIEAPYAKL FLAQNCKGFA ASGKTYKVGG FGFVFPKGSS ILPDISKAVL EVSEKGELGV LENNLIGSQK
1001: CDSNAEISED SSSLSPSSFW VLFLITGGVS TVCLVIFMAR ERLTYLYNYL LGHMAIWRLI SAVMRSWRSH PRGRFSRGIS DVESNGNAQH TSIHSPQYFG
1101: YRVPWQRNYS SRSSS

Best Arabidopsis Sequence Match ( AT4G35290.1 )
(BLAST)

001: MFWVLVLLSF IVLIGDGMIS EGAGLRPRYV DVGAIFSLGT LQGEVTNIAM KAAEEDVNSD PSFLGGSKLR ITTYDAKRNG FLTIMGALQF METDAVAIIG
101: PQTSIMAHVL SHLANELSVP MLSFTALDPS LSALQFPFFV QTAPSDLFLM RAIAEMISYY GWSEVIALYN DDDNSRNGIT ALGDELEGRR CKISYKAVLP
201: LDVVITSPRE IINELVKIQG MESRVIIVNT FPKTGKKIFE EAQKLGMMEK GYVWIATTWL TSLLDSVNPL PAKTAESLRG VLTLRIHTPN SKKKKDFVAR
301: WNKLSNGTVG LNVYGLYAYD TVWIIARAVK RLLDSRANIS FSSDPKLTSM KGGGSLNLGA LSIFDQGSQF LDYIVNTNMT GVTGQIQFLP DRSMIQPSYD
401: IINVVDDGFR QIGYWSNHSG LSIIPPESLY KKLSNRSSSN QHLNNVTWPG GTSETPRGWV FPNNGRRLRI GVPDRASFKE FVSRLDGSNK VQGYAIDVFE
501: AAVKLISYPV PHEFVLFGDG LKNPNFNEFV NNVTIGVFDA VVGDIAIVTK RTRIVDFTQP YIESGLVVVA PVTKLNDTPW AFLRPFTPPM WAVTAAFFLI
601: VGSVIWILEH RINDEFRGPP RKQIVTILWF SFSTMFFSHR ENTVSTLGRA VLLIWLFVVL IITSSYTASL TSILTVQQLN SPIRGVDTLI SSSGRVGFQV
701: GSYAENYMID ELNIARSRLV PLGSPKEYAA ALQNGTVAAI VDERPYVDLF LSEFCGFAIR GQEFTRSGWG FAFPRDSPLA IDMSTAILGL SETGQLQKIH
801: DKWLSRSNCS NLNGSVSDED SEQLKLRSFW GLFLVCGISC FIALFIYFFK IVRDFFRHGK YDEEATVPSP ESSRSKSLQT FLAYFDEKED ESKRRMKRKR
901: NDDLSLKPSR PI

Arabidopsis Description

GLR3.2Glutamate receptor 3.2 [Source:UniProtKB/Swiss-Prot;Acc:Q93YT1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.