Factsheet for VIT_12s0059g02270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 8
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0059g02270.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	VIT_12s0059g02270.t01	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g045650.2.1	Tomato	plasma membrane	67.75	71.38
Solyc07g052400.2.1	Tomato	cytosol	61.04	69.54
PGSC0003DMT400065539	Potato	plasma membrane	69.59	68.33
PGSC0003DMT400013497	Potato	plasma membrane	70.13	68.28
KRH56121	Soybean	plasma membrane	67.86	67.49
KRH26793	Soybean	plasma membrane	68.72	67.05
KRH25388	Soybean	plasma membrane	66.77	66.77
KRH22559	Soybean	plasma membrane	68.18	66.53
CDY06165	Canola	plasma membrane	62.01	65.79
AT1G05200.1	Thale cress	plasma membrane	67.1	64.65
GSMUA_Achr9P11690_001	Banana	plasma membrane	62.34	64.5
CDY10044	Canola	plasma membrane	64.94	63.9
CDY46839	Canola	plasma membrane	65.58	63.72
Bra015398.1-P	Field mustard	plasma membrane	65.58	63.72
CDY49512	Canola	plasma membrane	65.69	63.69
GSMUA_Achr9P02750_001	Banana	plasma membrane	63.1	63.58
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	61.15	62.85
Bra005589.1-P	Field mustard	plasma membrane	64.07	62.65
GSMUA_Achr6P00460_001	Banana	plasma membrane	62.66	62.59
Bra032480.1-P	Field mustard	plasma membrane	64.5	62.02
AT2G32390.5	Thale cress	plasma membrane	63.96	62.01
Zm00001d014451_P001	Maize	plasma membrane	61.36	59.87
Os06t0680500-01	Rice	cytosol, plasma membrane	57.14	59.33
EER97313	Sorghum	plasma membrane	59.31	59.31
Zm00001d006508_P003	Maize	plasma membrane	58.98	59.05
Zm00001d014458_P001	Maize	plasma membrane	58.77	59.02
KXG20638	Sorghum	plasma membrane	61.04	58.75
TraesCS7A01G455200.1	Wheat	plasma membrane	59.2	58.57
EER90229	Sorghum	plasma membrane	58.66	58.53
HORVU7Hr1G104490.2	Barley	golgi, plasma membrane	59.2	58.5
CDY48271	Canola	plastid	46.65	58.32
TraesCS7B01G355500.1	Wheat	plasma membrane	58.87	58.18
TraesCS2D01G265700.1	Wheat	plasma membrane	58.23	58.1
HORVU1Hr1G086120.3	Barley	plasma membrane	58.66	58.09
TraesCS2A01G257200.1	Wheat	plasma membrane	58.33	58.02
TraesCS1D01G398500.1	Wheat	plasma membrane	58.77	58.01
HORVU2Hr1G045730.6	Barley	plasma membrane	58.12	57.99
TraesCS2D01G226400.1	Wheat	plasma membrane	58.12	57.99
TraesCS2B01G285400.1	Wheat	plasma membrane	58.23	57.97
TraesCS2B01G246200.1	Wheat	plasma membrane	56.06	57.81
TraesCS1A01G390300.2	Wheat	plasma membrane	58.66	57.78
TraesCS1B01G418500.1	Wheat	plasma membrane	58.55	57.74
VIT_18s0122g00990.t01	Wine grape	plasma membrane	57.68	57.07
TraesCS2A01G220700.1	Wheat	plasma membrane	57.25	57.0
Zm00001d014456_P001	Maize	plasma membrane	57.03	56.97
TraesCS7D01G444100.2	Wheat	plasma membrane	59.2	56.63
CDY66698	Canola	plasma membrane	54.44	56.58
KXG20640	Sorghum	plasma membrane	56.93	56.56
CDX84735	Canola	plasma membrane	54.22	56.42
VIT_03s0038g03920.t01	Wine grape	plasma membrane	55.84	56.27
VIT_07s0031g02170.t01	Wine grape	plasma membrane	56.39	55.66
Zm00001d018614_P003	Maize	plastid	56.6	54.54
Os07t0103100-01	Rice	plasma membrane	56.06	54.18
CDY12211	Canola	plasma membrane	51.84	53.88
EER95720	Sorghum	plastid	56.71	53.85
VIT_12s0059g02260.t01	Wine grape	plasma membrane	51.52	52.37
Zm00001d018615_P001	Maize	plasma membrane	54.11	52.08
EER95721	Sorghum	plastid	51.95	48.93
VIT_04s0069g00560.t01	Wine grape	plasma membrane	34.42	35.49
VIT_04s0069g00390.t01	Wine grape	mitochondrion, plasma membrane	31.39	35.02
VIT_04s0069g00200.t01	Wine grape	cytosol	16.67	34.92
VIT_04s0069g00170.t01	Wine grape	plasma membrane	34.96	34.88
VIT_04s0069g00670.t01	Wine grape	plasma membrane	34.52	34.71
VIT_04s0069g00260.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	20.67	34.41
VIT_04s0069g00010.t01	Wine grape	mitochondrion, plasma membrane	31.6	33.72
VIT_11s0052g01020.t01	Wine grape	plasma membrane	32.68	33.19
VIT_04s0069g00620.t01	Wine grape	plasma membrane	35.5	33.13
VIT_04s0069g00540.t01	Wine grape	plasma membrane	25.32	33.1
VIT_04s0069g00380.t01	Wine grape	cytosol	14.61	32.93
VIT_04s0069g00060.t01	Wine grape	plasma membrane	34.63	32.69
VIT_04s0069g00230.t01	Wine grape	plasma membrane	34.52	31.18
VIT_04s0069g00720.t01	Wine grape	cytosol	20.13	31.16
GSMUA_Achr5P00750_001	Banana	mitochondrion	61.36	30.29
VIT_10s0003g00790.t01	Wine grape	plasma membrane	29.11	29.37
VIT_19s0014g01830.t01	Wine grape	plasma membrane	23.48	28.26
VIT_10s0003g00760.t01	Wine grape	plasma membrane	27.6	25.1
VIT_19s0014g01760.t01	Wine grape	plasma membrane	25.87	21.43
VIT_04s0069g00330.t01	Wine grape	plastid	35.17	18.47
VIT_19s0014g01770.t01	Wine grape	cytosol	27.81	16.26

Protein Annotations

Gene3D:1.10.287.70	EntrezGene:100250030	wikigene:100250030	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300
InterPro:ANF_lig-bd_rcpt	ProteinID:CCB52042	ProteinID:CCB52042.1	ncoils:Coil	UniProt:F6HIJ6	EMBL:FN595765
GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	EntrezGene:LOC100250030
wikigene:LOC100250030	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090	PRINTS:PR01176
PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850
InterPro:Solute-binding_3/MltF_N	TIGR:TC53999	TMHMM:TMhelix	UniParc:UPI0002109623	ArrayExpress:VIT_12s0059g02270	EnsemblPlantsGene:VIT_12s0059g02270
EnsemblPlants:VIT_12s0059g02270.t01	RefSeq:XP_002273744	RefSeq:XP_002273744.2	RefSeq:XP_002273744.3	RefSeq:XP_010657304.1	SEG:seg

Description

Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:F6HIJ6]

Coordinates

chr12:+:7067654..7072755

Molecular Weight (calculated)

102785.0 Da

IEP (calculated)

6.283

GRAVY (calculated)

0.035

Length

924 amino acids

Sequence
(BLAST)

001: MEVNLTAGSG RVFMAGVLLL IFCIWVPILG RAQNASVSSS AANVVNIGAV FTLNSFIGRA AQPAILAAID DVNSDSSILE GRKLNVIFQD TNCSGFLGTV
101: EALQLMEKDV VAIIGPQSSG IAHVMSHVVN EFHIPLLSFG ATDPTLSALQ FPYFLRTTQS DYYQMYAIAD LVDFFEWREV IAIFVDDDYG RNGISVLGDA
201: LAKKRAKISY KAAFTPGATK NEISDLLAGV NLMESRVFVV HVNPDSGLYI FSVAKVLGML NNGYVWIATD WLPSVLDSSE TVDPDQMNQL QGVVALRHHI
301: PDSDRKKSFT SRWNKLKNKG ISGLNSYAFY AYDSVSLVAH ALDVFFKEGG NISFSSDPKL HDTNGSKLQL STLHTFDGGQ KLLQTLITTN FTGLSGQIQF
401: DLEKNLIHPA YDVLNIGGTG FRRIGYWSNY SGLSVITPEI LYTRPPNTSS SNHHLYSVIW PGEITAKPRG WVFPNNGKPL RIGVPDRVSF KDFVARDKGP
501: LGVRGYCIDI FEAAVNLLPY AVPHTYMLYG NGLRNPSYDD LVSQVVGNKF DAAVGDITIV TNRTRIVDFT QPFMESGLVI VATVKETKSS PWAFLKPFTV
601: QMWCVTGAFF IFVGAVVWIL EHRINQEFRG PPSQQLITIF WFSFSTMFFS HRENTVSTLG RLVLIIWLFV VLIINSSYTA SLTSILTVQQ LTSRIEGIDS
701: LISSNDKIGV QDGSFAWNYL IEELNIPVSR LVHLKDQEEY ADALRLGPKE GGVAAIVDEL PYIQVFLAKL NCAFRIVGQE FTKSGWGFAF QRDSPLAVDL
801: STAILQLSEN GELQRIHDKW LSNKECSSQL SQVDENRLSL SSFWGLFLIS GIACFVALTV FFFRTFCQYR RYGPEEKEED DNEIDSPRRP PRPGCLVFID
901: KKEEEIKEAL KRKDSKQRAS NSTP

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.