Factsheet for Bra005589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48271	Canola	plastid	71.22	91.07
AT2G32390.5	Thale cress	plasma membrane	87.09	86.36
CDY66698	Canola	plasma membrane	77.57	82.45
CDX84735	Canola	plasma membrane	77.46	82.43
CDY12211	Canola	plasma membrane	77.25	82.11
Bra015398.1-P	Field mustard	plasma membrane	76.4	75.92
Bra032480.1-P	Field mustard	plasma membrane	73.55	72.32
Solyc05g045650.2.1	Tomato	plasma membrane	59.58	64.2
VIT_12s0059g02270.t01	Wine grape	plasma membrane	62.65	64.07
Solyc07g052400.2.1	Tomato	cytosol	53.97	62.89
KRH26793	Soybean	plasma membrane	62.43	62.3
PGSC0003DMT400065539	Potato	plasma membrane	61.9	62.17
KRH22559	Soybean	plasma membrane	61.8	61.67
KRH25388	Soybean	plasma membrane	60.0	61.36
PGSC0003DMT400013497	Potato	plasma membrane	61.59	61.33
KRH56121	Soybean	plasma membrane	59.58	60.6
GSMUA_Achr9P11690_001	Banana	plasma membrane	54.81	58.01
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	54.5	57.29
GSMUA_Achr9P02750_001	Banana	plasma membrane	54.07	55.73
GSMUA_Achr6P00460_001	Banana	plasma membrane	53.97	55.14
HORVU1Hr1G086120.3	Barley	plasma membrane	53.44	54.13
TraesCS2D01G265700.1	Wheat	plasma membrane	52.91	54.0
TraesCS2B01G285400.1	Wheat	plasma membrane	52.91	53.88
TraesCS1D01G398500.1	Wheat	plasma membrane	53.33	53.85
TraesCS1A01G390300.2	Wheat	plasma membrane	53.44	53.84
TraesCS2A01G257200.1	Wheat	plasma membrane	52.8	53.71
Zm00001d014458_P001	Maize	plasma membrane	52.28	53.7
Os06t0680500-01	Rice	cytosol, plasma membrane	50.48	53.6
Zm00001d014451_P001	Maize	plasma membrane	53.65	53.54
EER90229	Sorghum	plasma membrane	52.28	53.35
TraesCS7A01G455200.1	Wheat	plasma membrane	52.59	53.21
HORVU7Hr1G104490.2	Barley	golgi, plasma membrane	52.49	53.05
TraesCS1B01G418500.1	Wheat	plasma membrane	52.59	53.04
TraesCS7B01G355500.1	Wheat	plasma membrane	52.28	52.83
KXG20638	Sorghum	plasma membrane	53.44	52.6
KXG20640	Sorghum	plasma membrane	51.75	52.58
EER97313	Sorghum	plasma membrane	51.11	52.27
Zm00001d006508_P003	Maize	plasma membrane	50.79	52.0
Zm00001d014456_P001	Maize	plasma membrane	50.37	51.46
TraesCS7D01G444100.2	Wheat	plasma membrane	52.59	51.45
TraesCS2D01G226400.1	Wheat	plasma membrane	50.26	51.3
TraesCS2B01G246200.1	Wheat	plasma membrane	48.57	51.23
HORVU2Hr1G045730.6	Barley	plasma membrane	50.05	51.08
Os07t0103100-01	Rice	plasma membrane	51.43	50.84
Zm00001d018614_P003	Maize	plastid	51.53	50.78
TraesCS2A01G220700.1	Wheat	plasma membrane	49.74	50.65
EER95720	Sorghum	plastid	51.64	50.15
Bra036795.1-P	Field mustard	plasma membrane	46.77	49.61
Bra011603.1-P	Field mustard	plasma membrane	47.62	49.29
Bra034931.1-P	Field mustard	plasma membrane	47.83	48.65
Zm00001d018615_P001	Maize	plasma membrane	49.42	48.65
EER95721	Sorghum	plastid	47.41	45.67
Bra005591.1-P	Field mustard	plasma membrane	41.8	42.84
Bra020812.1-P	Field mustard	plasma membrane	39.15	36.49
Bra040758.1-P	Field mustard	cytosol, peroxisome, plasma membrane	19.68	31.37
Bra032072.1-P	Field mustard	plasma membrane	29.31	30.92
Bra018409.1-P	Field mustard	cytosol, nucleus, plasma membrane	29.52	29.87
Bra040761.1-P	Field mustard	cytosol	29.1	29.54
Bra040760.1-P	Field mustard	cytosol	26.03	29.22
Bra023313.1-P	Field mustard	plasma membrane	26.24	28.87
Bra032063.1-P	Field mustard	plasma membrane	27.72	28.39
GSMUA_Achr5P00750_001	Banana	mitochondrion	55.03	27.78
Bra015817.1-P	Field mustard	plasma membrane	28.99	27.16
Bra023989.1-P	Field mustard	cytosol	24.66	23.65
Bra022887.1-P	Field mustard	plasma membrane	41.48	21.11

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	EnsemblPlantsGene:Bra005589
EnsemblPlants:Bra005589.1	EnsemblPlants:Bra005589.1-P	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt
InterPro:Iontropic_Glu_rcpt_pln	UniProt:M4CN01	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090
PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822
SUPFAM:SSF53850	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI00025476CC	SEG:seg	:

Description

AT2G32390 (E=0.0) ATGLR3.5, GLR3.5, GLR6 | ATGLR3.5 (GLUTAMATE RECEPTOR 3.5); intracellular ligand-gated ion channel

Coordinates

chrA05:-:6378019..6381344

Molecular Weight (calculated)

105866.0 Da

IEP (calculated)

7.533

GRAVY (calculated)

-0.101

Length

945 amino acids

Sequence
(BLAST)

001: MELLVVIRAV SMGFVLLCVS GLWFLPTEGA GRESFSRNSS SSSRPRSVNV GALFTYDSFI GRAAKPALMA AIDDVNADQS ILRRTKLNIV FHDSNCSGFV
101: GTMGALQVME NKVVAAIGPQ SSGIGHIISH VANELHVPLL SFAATDPTLS SLQFPYFLRT TQNDYFQMNA IADFVSYFRW REVVAIFVDD EYGRNGISVL
201: GDALAKKRAK ISYKAAFTPG ADNSSITDLL ASVNLMESRI FVAHVNPDSG LNIFSAAKSL GMMGSGYVWI ATDWLLTALD SAETMDPETM DLLQGVVAFR
301: HYTPESNKKR RFKERWKSLR SKESSGGADG FNSYAMYAYD TVWLVARALE VFFSKGNTVT LSNDPNLRKT NDSNIKLSAL NVFNEGERFL QVIHEMNYTG
401: LTGQIEFDSE KNRKNPAYDI LNINSRGPQR VGYWSNHTGF SAEPPETLYS KPPNTSAEHQ RLKEIIWLGE VTKPPRGWVF PDNGEPLKIG VPDRVSYKNY
501: VSKDNNSLGV KGYCIDIFEA AIQLLPYPVP RTYIVYGDGK RNPSYDNLIS EVAANNFDVA VGDVTIVTNR TKFVDFTQPF MESGLVVVAP VKGAKSSPWS
601: FLKPFTVEMW AVTGAFFLFV GAIIWILEHR FKEEFRGPPR RQIITVFWFS FSTMFFSQRE NTVSTLGRFV LLIWLFVVLI INSSYTASLT SILTVQQLTS
701: RIEGMDSLIA SNEPIGVQDG AFAYKYLVNE LNIPPSRIIS LKDEEEYLSA LQLGPRAGGV EAIVDELPYI KALLSNSNCK FRTVGPEFTR TGWGFAFQRD
801: SPLAVDMSTA ILQLSEEGKL ENIRKKWLTY SHECLMQIAD KENYQISVQS FWGLFLICGI VWFIVLTLFC WKVFWQCQRL RTEEEGDEVR VSEEASSSRS
901: GRSLRAASFK DLIKVVDKRE AEIKEMLKQK SSKKLKTSQS LGETP

Best Arabidopsis Sequence Match ( AT2G32390.5 )
(BLAST)

001: MGFFVMIRDV SMGFMLLCIS ALWVLPIQGA GRESFSRNSS SSSLPSSVNV GALFTYDSFI GRAAKLAFVA AIEDINADQS ILRGTKLNIV FQDTNCSGFV
101: GTMGALQLME NKVVAAIGPQ SSGIGHIISH VANELHVPFL SFAATDPTLS SLQYPYFLRT TQNDYFQMNA ITDFVSYFRW REVVAIFVDD EYGRNGISVL
201: GDALAKKRAK ISYKAAFPPG ADNSSISDLL ASVNLMESRI FVVHVNPDSG LNIFSVAKSL GMMGSGYVWI TTDWLLTALD SMEPLDPRAL DLLQGVVAFR
301: HYTPESDNKR QFKGRWKNLR FKESLKSDDG FNSYALYAYD SVWLVARALD VFFSQGNTVT FSNDPSLRNT NDSGIKLSKL HIFNEGERFL QVILEMNYTG
401: LTGQIEFNSE KNRINPAYDI LNIKSTGPLR VGYWSNHTGF SVAPPETLYS KPSNTSAKDQ RLNEIIWPGE VIKPPRGWVF PENGKPLKIG VPNRVSYKNY
501: ASKDKNPLGV KGFCIDIFEA AIQLLPYPVP RTYILYGDGK KNPSYDNLIS EVAANIFDVA VGDVTIITNR TKFVDFTQPF IESGLVVVAP VKGAKSSPWS
601: FLKPFTIEMW AVTGALFLFV GAVIWILEHR FNEEFRGPPR RQIITVFWFS FSTMFFSHRE NTVSTLGRFV LLVWLFVVLI INSSYTASLT SILTVQQLTS
701: RIEGMDTLIA SNEPIGVQDG TFAWKFLVNE LNIAPSRIIP LKDEEEYLSA LQRGPRGGGV AAIVDELPYI KALLSNSNCK FRTVGQEFTR TGWGFAFQRD
801: SPLAVDMSTA ILQLAEEGKL EKIRKKWLTY DHECTMQISD TENYQISVQS FWGLFLICGV VWFIALTLFC WKVFWQYQRL RPEESDEVQA RSEEAGSSRG
901: KSLRAVSFKD LIKVVDKREA EIKEMLKEKS SKKLKDGQSS AENSQSKDHE TPQ

Arabidopsis Description

GLR3.5Glutamate receptor 3.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW97]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.