Factsheet for Solyc05g045650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g045650.2.1
Solyc07g052400.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	Solyc05g045650.2.1	AT1G05200.1	23590882
AT1G05200.1	Solyc07g052400.2.1	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013497	Potato	plasma membrane	97.26	89.88
Solyc07g052400.2.1	Tomato	cytosol	73.2	79.16
VIT_12s0059g02270.t01	Wine grape	plasma membrane	71.38	67.75
CDY06165	Canola	plasma membrane	65.11	65.56
KRH25388	Soybean	plasma membrane	67.27	63.85
KRH56121	Soybean	plasma membrane	67.16	63.4
KRH26793	Soybean	plasma membrane	67.84	62.83
GSMUA_Achr9P11690_001	Banana	plasma membrane	63.97	62.82
KRH22559	Soybean	plasma membrane	67.62	62.62
CDY10044	Canola	plasma membrane	66.02	61.66
Bra015398.1-P	Field mustard	plasma membrane	66.82	61.62
CDY46839	Canola	plasma membrane	66.7	61.51
CDY49512	Canola	plasma membrane	66.82	61.49
AT1G05200.1	Thale cress	plasma membrane	66.36	60.69
GSMUA_Achr9P02750_001	Banana	plasma membrane	63.17	60.41
Bra032480.1-P	Field mustard	plasma membrane	65.68	59.94
Bra005589.1-P	Field mustard	plasma membrane	64.2	59.58
AT2G32390.5	Thale cress	plasma membrane	64.54	59.39
Os06t0680500-01	Rice	cytosol, plasma membrane	59.98	59.1
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	60.32	58.84
GSMUA_Achr6P00460_001	Banana	plasma membrane	61.8	58.59
TraesCS2A01G257200.1	Wheat	plasma membrane	61.23	57.8
TraesCS2D01G265700.1	Wheat	plasma membrane	61.0	57.78
TraesCS2B01G285400.1	Wheat	plasma membrane	61.12	57.76
Zm00001d014458_P001	Maize	plasma membrane	60.21	57.39
TraesCS1D01G398500.1	Wheat	plasma membrane	60.55	56.73
TraesCS1A01G390300.2	Wheat	plasma membrane	60.43	56.5
HORVU1Hr1G086120.3	Barley	plasma membrane	60.09	56.48
TraesCS1B01G418500.1	Wheat	plasma membrane	60.32	56.46
Zm00001d014451_P001	Maize	plasma membrane	60.89	56.39
EER97313	Sorghum	plasma membrane	59.18	56.17
EER90229	Sorghum	plasma membrane	59.29	56.16
KXG20638	Sorghum	plasma membrane	61.35	56.04
Zm00001d006508_P003	Maize	plasma membrane	58.84	55.9
HORVU2Hr1G045730.6	Barley	plasma membrane	58.95	55.83
TraesCS2B01G246200.1	Wheat	plasma membrane	56.9	55.69
TraesCS2D01G226400.1	Wheat	plasma membrane	58.61	55.51
TraesCS7A01G455200.1	Wheat	plasma membrane	58.95	55.35
CDY66698	Canola	plasma membrane	55.76	55.01
TraesCS7B01G355500.1	Wheat	plasma membrane	58.61	54.97
HORVU7Hr1G104490.2	Barley	golgi, plasma membrane	58.61	54.97
Zm00001d018614_P003	Maize	plastid	59.64	54.54
CDY48271	Canola	plastid	45.95	54.53
Os07t0103100-01	Rice	plasma membrane	59.29	54.39
CDX84735	Canola	plasma membrane	55.07	54.39
TraesCS2A01G220700.1	Wheat	plasma membrane	57.47	54.31
Zm00001d014456_P001	Maize	plasma membrane	57.01	54.05
EER95720	Sorghum	plastid	59.86	53.96
KXG20640	Sorghum	plasma membrane	57.01	53.76
Solyc04g082610.2.1	Tomato	plasma membrane	56.78	53.66
TraesCS7D01G444100.2	Wheat	plasma membrane	58.95	53.52
Zm00001d018615_P001	Maize	plasma membrane	57.58	52.6
CDY12211	Canola	plasma membrane	52.57	51.86
Solyc02g082480.2.1	Tomato	plasma membrane	55.53	50.84
Solyc07g052390.2.1	Tomato	nucleus	48.69	49.25
EER95721	Sorghum	plastid	54.73	48.93
Solyc06g063170.2.1	Tomato	cytosol	33.07	31.73
Solyc08g006500.2.1	Tomato	extracellular	34.78	31.41
Solyc06g063190.2.1	Tomato	plasma membrane	34.44	30.57
Solyc06g063200.1.1	Tomato	plasma membrane	33.52	30.09
Solyc06g063210.2.1	Tomato	mitochondrion, plasma membrane	32.5	29.29
GSMUA_Achr5P00750_001	Banana	mitochondrion	61.23	28.69
Solyc06g063180.1.1	Tomato	plasma membrane	31.36	28.38
Solyc02g077290.1.1	Tomato	nucleus	29.3	27.78
Solyc04g078860.2.1	Tomato	plasma membrane	24.17	25.21

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004930	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0007186	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln
UniProt:K4C0P9	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090	PANTHER:PTHR43891
PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850	InterPro:Solute-binding_3/MltF_N
EnsemblPlantsGene:Solyc05g045650.2	EnsemblPlants:Solyc05g045650.2.1	TMHMM:TMhelix	UniParc:UPI00027668C8	SEG:seg	:

Description

Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:K4C0P9]

Coordinates

chr5:+:57388506..57393377

Molecular Weight (calculated)

97775.1 Da

IEP (calculated)

7.729

GRAVY (calculated)

-0.042

Length

877 amino acids

Sequence
(BLAST)

001: MPAILAAVDD VNADSTVLSG TKLHVVTQDT NCSGFIGTID ALQLMEKEVV VAVGPQSSGI AHVISHVVNE LRVPLLSFAT DPTLSSLQYQ YFLRTVTSDY
101: FQMYAIADLV DYYGWKEVIA IFVDDDNGRN GISVLGDALA KKRAKISYKA AFSPGATMSD IDDLLVSVNL MEARVYIVHV NPDTGLSFFS KAKKLGMMSS
201: GYVWIATDWL PSVLDSSDFN KDTMDVLQGV VALRHHTPDS DKKKTFTFRW KNLKSIKTSR FNSYALYAYD TVWLVARALD LFFKNGGNVT FSNDPSLRDT
301: NGSSLKLSSL RVFDQGQKLL QILVGMNFTG LTGQIQFDPQ KNLIHPAYDV LNVVGTGLRT IGYWSNYSGL SVTTPEVLYT KPANTSTSNQ KLYNAIWPGE
401: TIRRPRGWVF PNNGKPLRIA VPFRVTFEEF VKKDKGPAGV KGYCIDVFEA AIDLLAYPVP HVYILYGDGK RNPSFNSIVN DVAQNKYDAA VGDIAITTNR
501: TRIVDFTQPY MESGLVVVAP VKETKSSPWA FLKPFTIQMW GVTGVFFLFV GCVVWILEHR MNPEFRGPPR KQLITVFWFS FSTMFFAHRE NTLSTLGRCV
601: LIFWLFVVLI INSSYTASLT SILTVQKLSS GVAGIDSLIS SPDPIGVQDG SFAYNYLIDE LHVPKSRLRI IKSEAEYVSA LQNGPKGGGV AAIVDELPYV
701: ELFLSNSKCI FRTVGQEFTK SGWGFAFQRD SPLAIDLSTA ILQLSENGEL QRIHDKWLSN NECSSQNNQV DDTRLSLSSF WGLYVICGGA CAVALVVFIC
801: RVYCQFLRYD PETEEPEISE PESARSSRRS LRSRSFKDLM GFVDKREAEI KEMLKRKNSD NKKQISHISD VQQNSPV

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.