CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90229
EER95720
EER95721
EER97313
KXG20638
KXG20640

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	EER90229	AT1G05200.1	23590882
AT1G05200.1	EER95720	AT1G05200.1	23590882
AT1G05200.1	EER95721	AT1G05200.1	23590882
AT1G05200.1	EER97313	AT1G05200.1	23590882
AT1G05200.1	KXG20638	AT1G05200.1	23590882
AT1G05200.1	KXG20640	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014451_P001	Maize	plasma membrane	91.56	92.82
HORVU1Hr1G086120.3	Barley	plasma membrane	84.48	86.92
TraesCS1A01G390300.2	Wheat	plasma membrane	83.75	85.71
TraesCS1B01G418500.1	Wheat	plasma membrane	83.33	85.38
TraesCS1D01G398500.1	Wheat	plasma membrane	83.23	85.36
EER90229	Sorghum	plasma membrane	79.69	82.61
KXG20640	Sorghum	plasma membrane	75.31	77.74
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	61.25	65.41
Solyc05g045650.2.1	Tomato	plasma membrane	56.04	61.35
VIT_12s0059g02270.t01	Wine grape	plasma membrane	58.75	61.04
Solyc07g052400.2.1	Tomato	cytosol	50.31	59.56
KRH25388	Soybean	plasma membrane	56.25	58.44
KRH56121	Soybean	plasma membrane	56.46	58.34
PGSC0003DMT400013497	Potato	plasma membrane	57.4	58.06
PGSC0003DMT400065539	Potato	plasma membrane	56.88	58.02
EER97313	Sorghum	plasma membrane	55.73	57.9
KRH26793	Soybean	plasma membrane	57.08	57.87
KRH22559	Soybean	plasma membrane	56.67	57.44
CDY06165	Canola	plasma membrane	51.88	57.18
Bra015398.1-P	Field mustard	plasma membrane	55.83	56.36
CDY49512	Canola	plasma membrane	55.94	56.35
CDY46839	Canola	plasma membrane	55.73	56.26
AT1G05200.1	Thale cress	plasma membrane	56.15	56.2
AT2G32390.5	Thale cress	plasma membrane	55.21	55.61
CDY10044	Canola	plasma membrane	54.27	55.48
EER95720	Sorghum	plastid	55.31	54.57
Bra032480.1-P	Field mustard	plasma membrane	53.96	53.9
Bra005589.1-P	Field mustard	plasma membrane	52.6	53.44
KXG26996	Sorghum	plasma membrane	49.06	50.37
KXG29299	Sorghum	plasma membrane	48.23	50.0
EER95721	Sorghum	plastid	50.62	49.54
CDY66698	Canola	plasma membrane	45.0	48.59
CDX84735	Canola	plasma membrane	44.9	48.54
OQU84212	Sorghum	mitochondrion	45.52	48.07
CDY48271	Canola	plastid	36.88	47.9
CDY12211	Canola	plasma membrane	41.88	45.22
GSMUA_Achr5P00750_001	Banana	mitochondrion	62.4	32.0
OQU84757	Sorghum	plasma membrane	30.21	31.83
KXG19504	Sorghum	golgi, plasma membrane, vacuole	28.12	31.0
KXG35671	Sorghum	plasma membrane	31.15	30.51
KXG31244	Sorghum	mitochondrion	32.08	30.43
OQU89536	Sorghum	cytosol	28.23	29.98
OQU89534	Sorghum	plasma membrane	28.12	29.64
OQU89527	Sorghum	plasma membrane	28.65	29.57
EER98937	Sorghum	plasma membrane	29.06	29.52
KXG35672	Sorghum	mitochondrion, plasma membrane	29.58	29.28
EER98936	Sorghum	plasma membrane	28.54	28.96
KXG35670	Sorghum	plasma membrane	28.23	27.74

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	UniProt:A0A194YL07	InterPro:ANF_lig-bd_rcpt
ncoils:Coil	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln
EnsemblPlants:KXG20638	ProteinID:KXG20638	ProteinID:KXG20638.1	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094
PIRSF:PIRSF037090	PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF17	InterPro:Peripla_BP_I	SMART:SM00062
SMART:SM00079	EnsemblPlantsGene:SORBI_3010G231100	SUPFAM:SSF53822	SUPFAM:SSF53850	SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N
TMHMM:TMhelix	UniParc:UPI0003C6C528	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:57403228..57408966

Molecular Weight (calculated)

104832.0 Da

IEP (calculated)

6.517

GRAVY (calculated)

0.072

Length

960 amino acids

Sequence
(BLAST)

001: MGALRAMLLR RLALLAVAVA VPTVTAAAAP PSEVAVGALF TYDSTIGRAA RLAMELAVDD VNADRTVLAG THLSLLFQDT NCSGFLGTIE ALQLMERNVV
101: AVIGPQSSGI GHVISHVVNE LHVPLLSFAA TDPTLSASEY PYFIRTTISD YFQMNAVASI VDYYQWKEVT AIFVDDDYGR GGVSALGDAL AAKRARISYK
201: AAIPPNSNTD VINDVLFKAN MMESRVMVVH VNPDTGMRIF SVANKLQMMA SGYVWIVTDW LAAVLDSSMP RDRKDMSHLQ GLIVLRQHTP ESDAKKKFIS
301: KWNNAARNRS ITYGLNSYGF YAYDSVWAVA RGIDQFLNSG QQINFSPDPM LHDSNGSTLH LSTLKIFDGG EQMLQQLLLT NFTGLTGPVQ FNSDRNLVHP
401: AYDILNLGGS ESRLIGYWSN YSGLSVAPPE ILYQKPPNTS SLVQRLHNVV WPGDSTTTPK GWVFPNNGQP LRVGVPIKPS FKELVAGGKG PDNVTGYCID
501: IFNAAVKLLP YPVPCQFITV GDGRKNPNYD AIINMVAANS LDAAVGDFAI VRNRTKIAEF TQPYIESGLV IVAPVKQATS SAWAFLKPFT LEMWCVTGAL
601: FIFVGIVVWI LEHRSNEEFR GSPRRQLITI FWFSFSTMFF SHRQNTVSAL GRFVLIIWLF VVLIINSSYT ASLTSILTVQ QLATGITGID SLVSSGLPIG
701: YQDGKFTKNY LIDELNIPEY RLVPLNTIQE YADALKRGPK DGGVAAIVDE MPYVEIFLSY HCNFRIVGQE FTKEGWGFAF KRDSPLAADL STAILQLSES
801: GQLQRIHDEW FTGPSCSSDD SEVGATRLGL GSFWGLFLAC ALICLLALVV FFIRICWQYN KYSNSEAAGE PSAAATAAAA AAAADVAAAA AAATDAVERQ
901: RKPSRLGSFK EIIQFVDKKE EEIKRTMKRR LSEKDNQAAG SSDKDNQAAG SSDAHAVASA

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.