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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY06165
CDY10044
CDY46839
CDY49512

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G05200.1 CDY06165 AT1G05200.1 23590882
AT1G05200.1 CDY10044 AT1G05200.1 23590882
AT1G05200.1 CDY46839 AT1G05200.1 23590882
AT1G05200.1 CDY49512 AT1G05200.1 23590882
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06165 Canola plasma membrane 89.24 96.21
CDY49512 Canola plasma membrane 88.39 87.09
CDY46839 Canola plasma membrane 88.18 87.07
AT1G05200.1 Thale cress plasma membrane 84.66 82.9
CDY48271 Canola plastid 53.99 68.61
CDY66698 Canola plasma membrane 64.86 68.5
CDX84735 Canola plasma membrane 64.64 68.36
Solyc05g045650.2.1 Tomato plasma membrane 61.66 66.02
VIT_12s0059g02270.t01 Wine grape plasma membrane 63.9 64.94
Solyc07g052400.2.1 Tomato cytosol 55.27 64.0
PGSC0003DMT400065539 Potato plasma membrane 62.83 62.7
KRH26793 Soybean plasma membrane 63.05 62.51
KRH22559 Soybean plasma membrane 62.73 62.2
CDY12211 Canola plasma membrane 58.79 62.09
PGSC0003DMT400013497 Potato plasma membrane 62.62 61.96
KRH25388 Soybean plasma membrane 60.92 61.9
KRH56121 Soybean plasma membrane 60.92 61.57
GSMUA_Achr9P11690_001 Banana plasma membrane 58.15 61.14
GSMUA_Achr9P02750_001 Banana plasma membrane 58.25 59.65
GSMUA_Achr9P30180_001 Banana mitochondrion, plasma membrane 55.7 58.18
GSMUA_Achr6P00460_001 Banana plasma membrane 56.02 56.86
EER97313 Sorghum plasma membrane 55.06 55.95
TraesCS2D01G265700.1 Wheat plasma membrane 54.95 55.72
TraesCS2B01G285400.1 Wheat plasma membrane 54.95 55.6
Zm00001d006508_P003 Maize plasma membrane 54.63 55.58
Os06t0680500-01 Rice cytosol, plasma membrane 52.5 55.39
TraesCS2A01G257200.1 Wheat plasma membrane 54.63 55.22
TraesCS2B01G246200.1 Wheat plasma membrane 52.61 55.13
TraesCS7A01G455200.1 Wheat plasma membrane 54.74 55.03
TraesCS2D01G226400.1 Wheat plasma membrane 54.21 54.97
Zm00001d014451_P001 Maize plasma membrane 55.38 54.91
HORVU7Hr1G104490.2 Barley golgi, plasma membrane 54.63 54.87
EER90229 Sorghum plasma membrane 53.99 54.75
TraesCS7B01G355500.1 Wheat plasma membrane 54.42 54.65
HORVU2Hr1G045730.6 Barley plasma membrane 53.78 54.54
HORVU1Hr1G086120.3 Barley plasma membrane 53.99 54.34
KXG20638 Sorghum plasma membrane 55.48 54.27
CDY35797 Canola plasma membrane 47.5 54.26
Zm00001d014458_P001 Maize plasma membrane 53.14 54.24
TraesCS2A01G220700.1 Wheat plasma membrane 53.46 54.09
TraesCS1D01G398500.1 Wheat plasma membrane 53.78 53.95
TraesCS1A01G390300.2 Wheat plasma membrane 53.78 53.84
TraesCS1B01G418500.1 Wheat plasma membrane 53.57 53.68
KXG20640 Sorghum plasma membrane 52.72 53.23
TraesCS7D01G444100.2 Wheat plasma membrane 54.74 53.21
Zm00001d018614_P003 Maize plastid 54.31 53.18
Zm00001d014456_P001 Maize plasma membrane 52.18 52.97
Os07t0103100-01 Rice plasma membrane 53.57 52.62
EER95720 Sorghum plastid 54.31 52.42
CDY24327 Canola plasma membrane 49.84 51.32
CDY52597 Canola plasma membrane 49.52 50.99
CDX69127 Canola plasma membrane 49.52 50.99
CDX73718 Canola plasma membrane 48.14 50.73
CDX78008 Canola plasma membrane 48.03 50.62
CDY65624 Canola plasma membrane 46.65 50.34
CDX76331 Canola plasma membrane 48.67 50.22
Zm00001d018615_P001 Maize plasma membrane 51.12 50.0
CDY71348 Canola golgi, plasma membrane 14.06 49.81
CDY70557 Canola extracellular, plasma membrane 28.22 49.72
CDY68928 Canola extracellular, plasma membrane 28.22 49.72
CDX95758 Canola cytosol 20.77 47.91
CDX75491 Canola cytosol, plasma membrane, plastid 10.22 47.06
EER95721 Sorghum plastid 48.88 46.79
CDX80728 Canola cytosol 11.29 43.8
CDY15337 Canola plasma membrane 41.43 43.51
CDX75490 Canola extracellular, plasma membrane, vacuole 26.84 43.3
CDY12210 Canola plasma membrane 42.39 43.21
CDX84734 Canola plasma membrane 42.28 42.87
CDY48270 Canola plasma membrane 42.07 42.84
CDY66699 Canola plasma membrane 42.07 42.66
CDY58212 Canola cytosol, plasma membrane 29.18 32.85
CDY31759 Canola cytosol, peroxisome, plasma membrane 16.4 32.7
CDY70035 Canola cytosol, plasma membrane 27.37 31.77
CDY31756 Canola cytosol, peroxisome, plastid 28.86 31.22
CDY31755 Canola cytosol 30.67 31.2
CDY54213 Canola plasma membrane 29.18 30.82
CDY00544 Canola plasma membrane 25.35 30.55
CDX72325 Canola plasma membrane 21.62 30.12
CDY36173 Canola plasma membrane 25.56 29.78
CDY39533 Canola plasma membrane 30.56 29.56
CDY56837 Canola plasma membrane 28.75 29.41
CDY38574 Canola plasma membrane 30.24 29.37
CDY51113 Canola plasma membrane 26.84 29.34
CDY50141 Canola plasma membrane 16.51 29.25
CDX73196 Canola cytosol, peroxisome, plasma membrane 28.33 29.13
CDX85724 Canola plasma membrane 26.62 29.1
CDY45595 Canola plasma membrane 26.52 28.95
GSMUA_Achr5P00750_001 Banana mitochondrion 54.74 27.46
CDY68132 Canola plasma membrane 29.29 27.25
CDY13449 Canola cytosol 26.73 26.17
CDY63640 Canola cytosol 13.95 24.13
CDY72467 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.287.70MapMan:24.3.9Gene3D:3.40.190.10Gene3D:3.40.50.2300GO:A0A078FAK0UniProt:A0A078FAK0
InterPro:ANF_lig-bd_rcptEnsemblPlants:CDY10044ProteinID:CDY10044ProteinID:CDY10044.1ncoils:CoilGO:GO:0003674
GO:GO:0004871GO:GO:0004970GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006811
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0035235GO:GO:0038023EnsemblPlantsGene:GSBRNA2T00031834001InterPro:Iontro_rcptInterPro:Iontropic_Glu_rcpt_plnPFAM:PF00060
PFAM:PF00497PFAM:PF01094PIRSF:PIRSF037090PRINTS:PR01176PANTHER:PTHR43891PANTHER:PTHR43891:SF12
InterPro:Peripla_BP_ISMART:SM00079SUPFAM:SSF53822SUPFAM:SSF53850SignalP:SignalP-noTMInterPro:Solute-binding_3/MltF_N
TMHMM:TMhelixUniParc:UPI0004EECF6DSEG:seg:::
Description
BnaC08g44070DGlutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A078FAK0]
Coordinates
chrLK032000:-:618984..622961
Molecular Weight (calculated)
104645.0 Da
IEP (calculated)
7.788
GRAVY (calculated)
-0.055
Length
939 amino acids
Sequence
(BLAST)
001: MMIRGVSIAL LCVFVLLVVT QECTGKNVLS RNSSSSLLPQ RPSSVNVGAL FTYDSFIGRA AKPAFKAAMD DVNADQTILN GTKLNIVFQD SNCSGFIGTM
101: GALQLMETQV VAAIGPQSSG IAHMISYVAN ELHVPLLSFA ATDPTLSSLQ YPYFLRTTQS DYFQMHAVAD FISYSGWKQV IAIYVDDEYG RNGITILSDA
201: LAKKRSKISY KAAITPGADY TSIESLLVSV NMKASRVYVV HVNPDSGLNV FTVAKSLGMM GNGYVWIATD WLPTSLDSME PVDSETMDLL QGVVAFRHYT
301: PESSTKRELK GRWKNGFNSY ALYAYDSVWL LARALDVFFK EHNTITFSND QNLTKTSDSS IQLSALSVFN EGEKLLEIIL GMNHTGLTGR IQFDAERNRL
401: NPAYEVLNIA GTGPRRVGYW SNHSGLSVVT PETLYSKPPN TSTANQRLYG IIWPGEVTKP PRGWVFPNNG KPLKIAVPNR VSYKDYVSKD KNPPGVRGFC
501: VDVFEAALEL LPYPVPRNYI LYGDGKKNPS YNNLTNEVVA ENFDVAVGDI TITTNRTRFV DFTQPFIESG LVVVAPVKAA KSSPWSFLKP FTIEMWAVTG
601: AFFLFVGAIV WILEHRFNHE FRGPPRRQLI TIFWFSFSTM FFSHRENTVS TLGRLVLIIW LFVVLIINSS YTASLTSILT VQQLTSRIEG IDSLIQSKEP
701: IGVQDGTFAR NYLVNELNIS PHRIVPLRDE EHYLSALQLG PKAGGVAAIV DELPYIEVLL TNSNCKYRTV GQVFTRTGWG FAFQRDSPLA VDMSTAILQL
801: SEEGELEKIH RKWLNYKHEC SMQISNGENS ELSLKSFWGL FLICGVTCFV ALTIFFWRVF WQYQRLLPDS GDEEERVCEV TEASGSGRGL RTPSFKELIK
901: VVDTKEAEIK EMLKQKSSKK LKSSQSGAGS SHSQRSDIP
Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)
001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT
Arabidopsis Description
GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.