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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 5
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:peroxisome, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EER90229
EER95720
EER95721
EER97313
KXG20638
KXG20640

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G05200.1 EER90229 AT1G05200.1 23590882
AT1G05200.1 EER95720 AT1G05200.1 23590882
AT1G05200.1 EER95721 AT1G05200.1 23590882
AT1G05200.1 EER97313 AT1G05200.1 23590882
AT1G05200.1 KXG20638 AT1G05200.1 23590882
AT1G05200.1 KXG20640 AT1G05200.1 23590882
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d014456_P001 Maize plasma membrane 89.14 89.62
EER90229 Sorghum plasma membrane 78.82 79.16
KXG20638 Sorghum plasma membrane 77.74 75.31
GSMUA_Achr9P30180_001 Banana mitochondrion, plasma membrane 60.32 62.4
Solyc05g045650.2.1 Tomato plasma membrane 53.76 57.01
VIT_12s0059g02270.t01 Wine grape plasma membrane 56.56 56.93
Solyc07g052400.2.1 Tomato cytosol 48.6 55.73
KRH25388 Soybean plasma membrane 55.16 55.52
EER97313 Sorghum plasma membrane 55.16 55.52
KRH56121 Soybean plasma membrane 55.38 55.44
KRH26793 Soybean plasma membrane 55.48 54.49
PGSC0003DMT400065539 Potato plasma membrane 54.73 54.09
CDY06165 Canola plasma membrane 50.65 54.08
PGSC0003DMT400013497 Potato plasma membrane 55.05 53.95
KRH22559 Soybean plasma membrane 54.84 53.85
Bra015398.1-P Field mustard plasma membrane 54.84 53.63
CDY46839 Canola plasma membrane 54.73 53.52
CDY49512 Canola plasma membrane 54.84 53.52
AT2G32390.5 Thale cress plasma membrane 54.19 52.89
AT1G05200.1 Thale cress plasma membrane 54.52 52.87
CDY10044 Canola plasma membrane 53.23 52.72
EER95720 Sorghum plastid 54.84 52.42
Bra005589.1-P Field mustard plasma membrane 52.58 51.75
Bra032480.1-P Field mustard plasma membrane 52.69 50.99
EER95721 Sorghum plastid 51.72 49.03
KXG26996 Sorghum plasma membrane 49.14 48.88
CDY66698 Canola plasma membrane 45.38 47.47
CDX84735 Canola plasma membrane 45.16 47.3
KXG29299 Sorghum plasma membrane 46.99 47.19
CDY48271 Canola plastid 37.1 46.68
OQU84212 Sorghum mitochondrion 44.62 45.65
CDY12211 Canola plasma membrane 41.61 43.53
KXG19504 Sorghum golgi, plasma membrane, vacuole 29.78 31.8
KXG35671 Sorghum plasma membrane 32.9 31.22
OQU84757 Sorghum plasma membrane 30.54 31.17
KXG31244 Sorghum mitochondrion 33.55 30.83
GSMUA_Achr5P00750_001 Banana mitochondrion 60.43 30.02
OQU89536 Sorghum cytosol 29.14 29.98
OQU89534 Sorghum plasma membrane 28.71 29.31
EER98937 Sorghum plasma membrane 29.46 28.99
KXG35672 Sorghum mitochondrion, plasma membrane 30.22 28.97
OQU89527 Sorghum plasma membrane 28.71 28.71
EER98936 Sorghum plasma membrane 28.92 28.44
KXG35670 Sorghum plasma membrane 29.68 28.25
Protein Annotations
Gene3D:1.10.287.70MapMan:24.3.9Gene3D:3.40.190.10Gene3D:3.40.50.2300UniProt:A0A194YKY8InterPro:ANF_lig-bd_rcpt
GO:GO:0003674GO:GO:0004871GO:GO:0004970GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006811GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0035235GO:GO:0038023InterPro:Iontro_rcptInterPro:Iontropic_Glu_rcpt_plnEnsemblPlants:KXG20640
ProteinID:KXG20640ProteinID:KXG20640.1ProteinID:KXG20641.1PFAM:PF00060PFAM:PF00497PFAM:PF01094
PIRSF:PIRSF037090PRINTS:PR01176PANTHER:PTHR43891PANTHER:PTHR43891:SF17InterPro:Peripla_BP_ISMART:SM00079
EnsemblPlantsGene:SORBI_3010G231300SUPFAM:SSF53822SUPFAM:SSF53850SignalP:SignalP-noTMInterPro:Solute-binding_3/MltF_NTMHMM:TMhelix
UniParc:UPI0001C805A2SEG:seg::::
Description
hypothetical protein
Coordinates
chr10:+:57417517..57425014
Molecular Weight (calculated)
101716.0 Da
IEP (calculated)
7.575
GRAVY (calculated)
0.065
Length
930 amino acids
Sequence
(BLAST)
001: MGGAAQLVVV TVLLATAAAA SAAGPRPSEV AVGALFTYDS TIGRAAQLAI ELAVDDVNAD AKVLKGTKLN LIPMDTNCSG FLGTIKALEL MEKNVVAVIG
101: PQSSEIGHVI SQVVNELHVP LLSFAATDPT LSASEYPYFI RTTTSDYFQM NAVASIVDYY QWKRVTAIYV DDDYGRGGVS ALGDALALKR AQVSYKAAIP
201: PNSDTDVIRD VLFRANMMES RIMVVHVNPD TGLRVFSAAK KLQMMTSGYV WIVTDWLAAV LDSSPASRDP KNISNIQGVI VLRQHTPDSD AKKKFISRWN
301: TVARNRSMTS GLNSYAFYAY DSVWAVARSV DQFLNAGQQI NFSTDPRLHD PNGTTLRLST LKIFDGGDQM LQQLLLTNFT GLTGPVRFDS SGNLVRPAYD
401: ILNVGPSGAS LVGYWSNYSG LSVSAPEILY QMPSNASSDY QLKNVVWPGD STDIPRGWVF PNNGQPLRVG IPVKPSFKTL VSGSSPDTVR GYCIDVFKSA
501: IKLLPYPVPY QFVPIGDGTK NPSYVGIVGM VASNTLDVAV GDFAIVRNGT RLAEYTQPYI DSGLVIVAPV KHVSSSAWAF LKPFTWEMWF VTGALFVLVG
601: IVVWLLEHRT NEEFRGPPRN QIITIFWFSF STMFFSHRQN TGTALGRFVL IIWMFVVLII TSSYTASLTS ILTVQQLATG ITGLDSLISS SLPIGYQTGK
701: FTKKYLMINL NIPESRLVHL NTIQEYADAL TRGPKNGGVA AIIDEKPYID IFLSHYCNFK IVGQQFTREG WGFAFQKESP LAADMSTAIL QLSESGKLQS
801: IHDEWFTKPS CATDDESNLG ATRLGLGSFW GLFLICALIC LLALVMFFIQ VCWQYKQYSN SEDADESSAA GADGAGKRQR RLSGLGSFKE IVKFVDMKEE
901: EIMKKSTKRR SGEKDNHAAG LSYAQSVASA
Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)
001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT
Arabidopsis Description
GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.