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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY06165
CDY10044
CDY46839
CDY49512

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G05200.1 CDY06165 AT1G05200.1 23590882
AT1G05200.1 CDY10044 AT1G05200.1 23590882
AT1G05200.1 CDY46839 AT1G05200.1 23590882
AT1G05200.1 CDY49512 AT1G05200.1 23590882
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032480.1-P Field mustard plasma membrane 98.62 89.39
CDY10044 Canola plasma membrane 96.21 89.24
CDY46839 Canola plasma membrane 89.09 81.6
CDY49512 Canola plasma membrane 88.75 81.11
AT1G05200.1 Thale cress plasma membrane 85.42 77.58
Solyc05g045650.2.1 Tomato plasma membrane 65.56 65.11
CDX84735 Canola plasma membrane 65.44 64.19
CDY66698 Canola plasma membrane 65.33 64.0
Solyc07g052400.2.1 Tomato cytosol 59.47 63.87
CDY48271 Canola plastid 53.39 62.92
VIT_12s0059g02270.t01 Wine grape plasma membrane 65.79 62.01
CDY12211 Canola plasma membrane 62.57 61.3
PGSC0003DMT400065539 Potato plasma membrane 64.98 60.15
PGSC0003DMT400013497 Potato plasma membrane 64.87 59.54
KRH26793 Soybean plasma membrane 64.41 59.24
KRH25388 Soybean plasma membrane 62.69 59.09
KRH22559 Soybean plasma membrane 64.18 59.03
KRH56121 Soybean plasma membrane 62.69 58.77
GSMUA_Achr9P11690_001 Banana plasma membrane 59.82 58.34
GSMUA_Achr9P02750_001 Banana plasma membrane 60.28 57.25
GSMUA_Achr9P30180_001 Banana mitochondrion, plasma membrane 57.52 55.73
Os06t0680500-01 Rice cytosol, plasma membrane 55.8 54.61
GSMUA_Achr6P00460_001 Banana plasma membrane 57.52 54.16
CDY35797 Canola plasma membrane 50.98 54.01
EER97313 Sorghum plasma membrane 56.72 53.46
TraesCS2D01G265700.1 Wheat plasma membrane 56.83 53.46
TraesCS2B01G285400.1 Wheat plasma membrane 56.83 53.34
Zm00001d006508_P003 Maize plasma membrane 56.49 53.3
TraesCS2A01G257200.1 Wheat plasma membrane 56.49 52.96
TraesCS7A01G455200.1 Wheat plasma membrane 56.49 52.68
Zm00001d014451_P001 Maize plasma membrane 57.18 52.59
TraesCS2B01G246200.1 Wheat plasma membrane 54.08 52.57
TraesCS2D01G226400.1 Wheat plasma membrane 55.8 52.48
HORVU1Hr1G086120.3 Barley plasma membrane 56.14 52.41
HORVU7Hr1G104490.2 Barley golgi, plasma membrane 56.26 52.41
TraesCS7B01G355500.1 Wheat plasma membrane 56.14 52.3
HORVU2Hr1G045730.6 Barley plasma membrane 55.57 52.27
EER90229 Sorghum plasma membrane 55.34 52.05
KXG20638 Sorghum plasma membrane 57.18 51.88
Zm00001d014458_P001 Maize plasma membrane 54.76 51.85
TraesCS1D01G398500.1 Wheat plasma membrane 55.57 51.71
TraesCS1A01G390300.2 Wheat plasma membrane 55.68 51.71
TraesCS2A01G220700.1 Wheat plasma membrane 54.99 51.62
TraesCS1B01G418500.1 Wheat plasma membrane 55.22 51.33
Zm00001d018614_P003 Maize plastid 56.14 50.99
TraesCS7D01G444100.2 Wheat plasma membrane 56.49 50.93
KXG20640 Sorghum plasma membrane 54.08 50.65
Zm00001d014456_P001 Maize plasma membrane 53.62 50.49
Os07t0103100-01 Rice plasma membrane 55.11 50.21
CDY71348 Canola golgi, plasma membrane 15.27 50.19
EER95720 Sorghum plastid 55.91 50.05
CDY24327 Canola plasma membrane 52.01 49.67
CDY52597 Canola plasma membrane 51.55 49.23
CDX69127 Canola plasma membrane 51.32 49.01
CDX73718 Canola plasma membrane 49.83 48.71
CDX78008 Canola plasma membrane 49.83 48.71
CDX76331 Canola plasma membrane 50.52 48.35
Zm00001d018615_P001 Maize plasma membrane 53.27 48.33
CDY65624 Canola plasma membrane 48.22 48.28
CDX95758 Canola cytosol 22.39 47.91
CDX75491 Canola cytosol, plasma membrane, plastid 11.02 47.06
CDY70557 Canola extracellular, plasma membrane 28.36 46.34
CDY68928 Canola extracellular, plasma membrane 28.24 46.15
EER95721 Sorghum plastid 50.98 45.26
CDX80728 Canola cytosol 12.28 44.21
CDY15337 Canola plasma membrane 42.25 41.16
CDY12210 Canola plasma membrane 43.17 40.83
CDY48270 Canola plasma membrane 43.17 40.78
CDX75490 Canola extracellular, plasma membrane, vacuole 27.1 40.55
CDX84734 Canola plasma membrane 43.05 40.5
CDY66699 Canola plasma membrane 42.82 40.28
CDY58212 Canola cytosol, plasma membrane 31.69 33.09
CDY31759 Canola cytosol, peroxisome, plasma membrane 17.8 32.91
CDY70035 Canola cytosol, plasma membrane 29.85 32.14
CDY31756 Canola cytosol, peroxisome, plastid 31.34 31.45
CDY31755 Canola cytosol 32.84 30.99
CDX72325 Canola plasma membrane 23.31 30.12
CDY54213 Canola plasma membrane 30.54 29.92
CDY00544 Canola plasma membrane 26.64 29.78
CDY51113 Canola plasma membrane 29.28 29.69
CDY36173 Canola plasma membrane 27.44 29.65
CDX85724 Canola plasma membrane 29.05 29.45
CDX73196 Canola cytosol, peroxisome, plasma membrane 30.65 29.24
CDY56837 Canola plasma membrane 30.77 29.19
CDY39533 Canola plasma membrane 32.49 29.15
CDY38574 Canola plasma membrane 32.26 29.06
CDY45595 Canola plasma membrane 28.36 28.72
CDY50141 Canola plasma membrane 17.45 28.68
CDY68132 Canola plasma membrane 31.11 26.86
GSMUA_Achr5P00750_001 Banana mitochondrion 57.06 26.55
CDY13449 Canola cytosol 28.24 25.65
CDY63640 Canola cytosol 14.93 23.94
CDY72467 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.287.70MapMan:24.3.9Gene3D:3.40.190.10Gene3D:3.40.50.2300GO:A0A078EVW1InterPro:ANF_lig-bd_rcpt
EnsemblPlants:CDY06165ProteinID:CDY06165ProteinID:CDY06165.1ncoils:CoilGO:GO:0003674GO:GO:0004871
GO:GO:0004970GO:GO:0005215GO:GO:0005575GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0009987GO:GO:0016020GO:GO:0038023EnsemblPlantsGene:GSBRNA2T00122059001InterPro:Iontro_rcptInterPro:Iontropic_Glu_rcpt_pln
PFAM:PF00060PFAM:PF00497PFAM:PF01094PIRSF:PIRSF037090PANTHER:PTHR43891PANTHER:PTHR43891:SF12
InterPro:Peripla_BP_ISMART:SM00079SUPFAM:SSF53822SUPFAM:SSF53850InterPro:Solute-binding_3/MltF_NTMHMM:TMhelix
UniParc:UPI0004EEA45BSEG:seg::::
Description
BnaA09g50380D
Coordinates
chrLK031968:+:73933..76756
Molecular Weight (calculated)
97234.2 Da
IEP (calculated)
6.918
GRAVY (calculated)
-0.084
Length
871 amino acids
Sequence
(BLAST)
001: MNDVNADQTV LKGTKLNIVF QDSNCSGFIG TMGALQLMET QVVAALGPQS SGIAHMISYV ANELHVPLLS FAATDPTLSS LQYPYFLRTT QNDYFQMHAV
101: ADFISYSGWR QVIAIYVDDE YGRNGISILS DALAKKRSKI SYKAAITPGA ESTSIESLLV SVNLKASRVY VVHVNPDSGL NVFTVAKSLG MMGNGYVWIA
201: TDWLPTSLDS MAPVGSETMD LLQGVVAFRH YTPESSMKRE LKGRWNNGFN SYALYAYDSV WLLACALDVF FKEHNTITFS NDQNLTKTSD SSIQLSALSV
301: FNEGEKLLEI ILGMNHTGLT GRIQFDAERN RVNPAYEVLN IAGTGPRRVG YWSNHSGLSV VTPETLYSKP PNTSTANQRL YGIIWPGEVT KTPRGWVFPN
401: NGKPLKIAVP NRVSYKDYVS KDKNPPGVRG YCVDVFEAAL ELLPYPVPRN YILYGDGKKN PSYNNLINEV VTENFDVAVG DITITTNRTW FVDFTQPFIE
501: SGLVVVAPVK AAKSSPWSFL KPFTIEMWAV TGAFFLLVGA IVWILEHRFN QEFRGPPKRQ LITIFWFSFS TMFFSHRENT VSTLGRLVLI IWLFVVLIIN
601: SSYTASLTSI LTVQQLTSRI EGIDSLIQSN EAIGVQDGTF ARNYLVNELN ISPHRIVPLR DEEHYLSALQ LGPKAGGVAA IVDELPYVEV LLTNSNCKYR
701: TVGQVFTRTG WGFAFQRDSP LAVDMSTAIL QLSEEGELEK IHRKWLNYKH ECSMQISNGE NSELSLKSFW GLFLICGVTC FVALTIFFWR VFWQYQRLLP
801: DSGDEEERAC EVSESSRSGR GLRAPSFKEL IKVVDTKEAE IKEMLKEKSS KKLKSSQSGA GSSHSQRSDI P
Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)
001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT
Arabidopsis Description
GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.