Factsheet for Bra032480.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015398.1-P
Bra032480.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	Bra015398.1-P	AT1G05200.1	23590882
AT1G05200.1	Bra032480.1-P	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06165	Canola	plasma membrane	89.39	98.62
Bra015398.1-P	Field mustard	plasma membrane	86.68	87.59
AT1G05200.1	Thale cress	plasma membrane	83.25	83.42
Bra005589.1-P	Field mustard	plasma membrane	72.32	73.55
Solyc05g045650.2.1	Tomato	plasma membrane	59.94	65.68
VIT_12s0059g02270.t01	Wine grape	plasma membrane	62.02	64.5
Solyc07g052400.2.1	Tomato	cytosol	54.11	64.12
PGSC0003DMT400065539	Potato	plasma membrane	61.81	63.12
KRH26793	Soybean	plasma membrane	61.5	62.41
KRH22559	Soybean	plasma membrane	61.08	61.99
PGSC0003DMT400013497	Potato	plasma membrane	61.19	61.96
KRH25388	Soybean	plasma membrane	59.31	61.69
KRH56121	Soybean	plasma membrane	59.52	61.57
GSMUA_Achr9P11690_001	Banana	plasma membrane	56.5	60.81
GSMUA_Achr9P02750_001	Banana	plasma membrane	56.4	59.11
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	54.11	57.84
GSMUA_Achr6P00460_001	Banana	plasma membrane	54.21	56.32
EER97313	Sorghum	plasma membrane	53.28	55.41
TraesCS2D01G265700.1	Wheat	plasma membrane	53.28	55.29
TraesCS2B01G285400.1	Wheat	plasma membrane	53.28	55.17
Zm00001d006508_P003	Maize	plasma membrane	52.97	55.15
TraesCS2A01G257200.1	Wheat	plasma membrane	52.97	54.79
Zm00001d014451_P001	Maize	plasma membrane	53.9	54.7
TraesCS7A01G455200.1	Wheat	plasma membrane	53.07	54.6
TraesCS2B01G246200.1	Wheat	plasma membrane	50.88	54.58
TraesCS2D01G226400.1	Wheat	plasma membrane	52.55	54.54
HORVU1Hr1G086120.3	Barley	plasma membrane	52.86	54.45
HORVU7Hr1G104490.2	Barley	golgi, plasma membrane	52.97	54.44
Os06t0680500-01	Rice	cytosol, plasma membrane	50.26	54.27
TraesCS7B01G355500.1	Wheat	plasma membrane	52.76	54.22
EER90229	Sorghum	plasma membrane	52.13	54.1
Zm00001d014458_P001	Maize	plasma membrane	51.72	54.02
KXG20638	Sorghum	plasma membrane	53.9	53.96
HORVU2Hr1G045730.6	Barley	plasma membrane	51.93	53.89
TraesCS1A01G390300.2	Wheat	plasma membrane	52.45	53.73
TraesCS2A01G220700.1	Wheat	plasma membrane	51.82	53.66
TraesCS1D01G398500.1	Wheat	plasma membrane	52.24	53.63
TraesCS1B01G418500.1	Wheat	plasma membrane	52.13	53.47
TraesCS7D01G444100.2	Wheat	plasma membrane	53.07	52.8
KXG20640	Sorghum	plasma membrane	50.99	52.69
Zm00001d018614_P003	Maize	plastid	52.55	52.66
Zm00001d014456_P001	Maize	plasma membrane	50.68	52.65
Os07t0103100-01	Rice	plasma membrane	51.72	51.99
EER95720	Sorghum	plastid	52.55	51.9
Bra034931.1-P	Field mustard	plasma membrane	49.95	51.67
Bra036795.1-P	Field mustard	plasma membrane	47.03	50.73
Bra011603.1-P	Field mustard	plasma membrane	47.76	50.27
Zm00001d018615_P001	Maize	plasma membrane	49.74	49.79
EER95721	Sorghum	plastid	47.55	46.59
Bra005591.1-P	Field mustard	plasma membrane	41.21	42.95
Bra020812.1-P	Field mustard	plasma membrane	39.96	37.87
Bra040758.1-P	Field mustard	cytosol, peroxisome, plasma membrane	20.5	33.22
Bra032072.1-P	Field mustard	plasma membrane	29.55	31.7
Bra040760.1-P	Field mustard	cytosol	27.06	30.88
Bra018409.1-P	Field mustard	cytosol, nucleus, plasma membrane	29.86	30.73
Bra040761.1-P	Field mustard	cytosol	29.76	30.72
Bra032063.1-P	Field mustard	plasma membrane	29.03	30.23
Bra023313.1-P	Field mustard	plasma membrane	26.01	29.1
GSMUA_Achr5P00750_001	Banana	mitochondrion	53.28	27.35
Bra015817.1-P	Field mustard	plasma membrane	28.51	27.16
Bra023989.1-P	Field mustard	cytosol	25.7	25.08
Bra022887.1-P	Field mustard	plasma membrane	41.31	21.38

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	EnsemblPlantsGene:Bra032480
EnsemblPlants:Bra032480.1	EnsemblPlants:Bra032480.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023
InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	UniProt:M4EUJ8	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094
PIRSF:PIRSF037090	PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079
SUPFAM:SSF53822	SUPFAM:SSF53850	SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI00025435A5
SEG:seg	:	:	:	:	:

Description

AT1G05200 (E=0.0) ATGLR3.4, GLR3.4, GLUR3 | ATGLR3.4; intracellular ligand-gated ion channel

Coordinates

chrA09:-:36246731..36249759

Molecular Weight (calculated)

106696.0 Da

IEP (calculated)

7.788

GRAVY (calculated)

-0.061

Length

961 amino acids

Sequence
(BLAST)

001: MTRGVSIALL CVSVLLVVTQ ECAGESVLSR NSSTSPPLPQ RPSSVNVGAL FTYDSFIGRA AKPAFKAAMN DVNADQTVLK GTKLNIVFQD SNCSGFIGTM
101: GALQLMETQV VAALGPQSSG IAHMISYVAN ELHVPLLSFA ATDPTLSSLQ YPYFLRTTQN DHFQMHAVAD FISYSGWRQV IAIYVDDEYG RNGISILSDA
201: LAKKRSKISY KAAITPGAES TSIESLLVSV NLKASRVYVV HVNPDSGLNV FTVAKSLGMM GNGYVWIATD WLPTSLDSMA PVGSETMDLL QGVVAFRHYT
301: TETSMKRELK GRWKNGFNSY ALYAYDSVWL LARALDVFFK EHNTITFSND QNLTKTSDSS IQLSALSVFN EGEKLLEIIL GMNHTGLTGR IQFDAERNRV
401: NPAYEVLNIA GTGPRRVGYW SNHSGLSVVT PETLYSKPPN TSTANQRLYG IIWPGEVTKP PRGWVFPNNG KPLKIAVPNR VSYKDYVSKD KNPPGVRGYC
501: VDVFEAALEL LPYPVPRNYI LYGDGKKNPS YNNLINEVVT ENFDVAVGDI TITTNRTRFV DFTQPFIESG LVVVAPVKAA KSSPWSFLKP FTIEMWAVTG
601: AFFLLVGAIV WILEHRFNQE FRGPPKRQLI TIFWFSFSTM FFSHSKYTLT SLFPERISGF TPFDLSGENT VSTLGRLVLI IWLFVVLIIN SSYTASLTSI
701: LTVQQLTSRI EGIDSLIQSN EPIGVQDGTF ARNYLVNELN ISPHRIVPLR DEEHYLSALQ LGPKAGGVAA IVDELPYVEV LLTNSNCKYR TVGQVFTRTG
801: WGFAFQRDSP LAVDMSTAIL QLSEEGELEK IHRKWLNYKH ECSMQISNGE NSELSLKSFW GLFLICGITC FVALTVFFWR VFWQYQRLLP DSGDEEERAC
901: EVSESSRSGR GLRAPSFKEL IKVVDTKEAE IKEMLKEKSG KKLKSSQSGA GSSHSQRSDI P

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.