Factsheet for GSMUA_Achr9P11690_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P00750_001
GSMUA_Achr6P00460_001
GSMUA_Achr9P02750_001
GSMUA_Achr9P11690_001
GSMUA_Achr9P30180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	GSMUA_Achr5P00750_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr6P00460_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P02750_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P11690_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P30180_001	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P02750_001	Banana	plasma membrane	77.94	75.9
GSMUA_Achr6P00460_001	Banana	plasma membrane	73.12	70.59
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	64.95	64.52
Solyc05g045650.2.1	Tomato	plasma membrane	62.82	63.97
EER97313	Sorghum	plasma membrane	65.85	63.64
TraesCS2B01G246200.1	Wheat	plasma membrane	63.72	63.5
TraesCS2D01G226400.1	Wheat	plasma membrane	65.73	63.39
HORVU2Hr1G045730.6	Barley	plasma membrane	65.73	63.39
Zm00001d006508_P003	Maize	plasma membrane	65.51	63.38
TraesCS2A01G220700.1	Wheat	plasma membrane	65.85	63.36
Solyc07g052400.2.1	Tomato	cytosol	56.77	62.52
VIT_12s0059g02270.t01	Wine grape	plasma membrane	64.5	62.34
PGSC0003DMT400065539	Potato	plasma membrane	64.39	61.11
PGSC0003DMT400013497	Potato	plasma membrane	64.28	60.48
CDY06165	Canola	plasma membrane	58.34	59.82
KRH25388	Soybean	plasma membrane	61.81	59.74
KRH22559	Soybean	plasma membrane	62.82	59.24
KRH56121	Soybean	plasma membrane	61.59	59.2
KRH26793	Soybean	plasma membrane	62.71	59.13
CDY10044	Canola	plasma membrane	61.14	58.15
GSMUA_Achr9P23900_001	Banana	plasma membrane	59.69	58.06
CDY49512	Canola	plasma membrane	61.7	57.82
Bra015398.1-P	Field mustard	plasma membrane	61.48	57.73
GSMUA_Achr5P19180_001	Banana	plasma membrane	58.12	57.67
GSMUA_Achr3P27050_001	Banana	plasma membrane	58.79	57.38
CDY46839	Canola	plasma membrane	61.03	57.31
AT1G05200.1	Thale cress	plasma membrane	60.81	56.62
Bra032480.1-P	Field mustard	plasma membrane	60.81	56.5
AT2G32390.5	Thale cress	plasma membrane	59.35	55.61
Bra005589.1-P	Field mustard	plasma membrane	58.01	54.81
GSMUA_Achr5P00740_001	Banana	plasma membrane	48.82	50.76
CDY48271	Canola	plastid	41.77	50.47
CDY66698	Canola	plasma membrane	49.83	50.06
CDX84735	Canola	plasma membrane	49.5	49.77
CDY12211	Canola	plasma membrane	45.58	45.78
GSMUA_Achr6P26740_001	Banana	cytosol, plasma membrane, plastid	26.09	35.25
GSMUA_Achr7P16350_001	Banana	cytosol, peroxisome, plasma membrane	28.67	35.12
GSMUA_Achr6P01870_001	Banana	cytosol	32.36	32.99
GSMUA_Achr4P02110_001	Banana	cytosol	29.68	32.8
GSMUA_AchrUn_...	Banana	golgi	31.02	32.51
GSMUA_Achr3P04970_001	Banana	plasma membrane	34.04	31.77
GSMUA_Achr9P13570_001	Banana	plasma membrane	31.91	31.25
GSMUA_Achr5P00750_001	Banana	mitochondrion	62.93	30.02
GSMUA_Achr2P15450_001	Banana	plasma membrane	26.65	29.94
GSMUA_Achr4P30920_001	Banana	plasma membrane	24.52	27.86
GSMUA_Achr6P01860_001	Banana	cytosol, peroxisome, plasma membrane	30.01	27.74

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0035235	GO:GO:0038023	EnsemblPlantsGene:GSMUA_Achr9G11690_001	EnsemblPlants:GSMUA_Achr9P11690_001	EnsemblPlants:GSMUA_Achr9T11690_001	InterPro:Iontro_rcpt
InterPro:Iontropic_Glu_rcpt_pln	UniProt:M0TZH8	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090
PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822
SUPFAM:SSF53850	SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI0002965384	SEG:seg

Description

Glutamate receptor 3.4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G11690_001]

Coordinates

chr9:+:7599874..7605320

Molecular Weight (calculated)

98682.2 Da

IEP (calculated)

6.291

GRAVY (calculated)

0.074

Length

893 amino acids

Sequence
(BLAST)

001: MGSIPLLVLC FSFTLIAAMA ATASDNNTIS GSRPSEISIG ALFTFDSTIG RAAKLAIELA VDDVNKNSSV LAGTRLRLFT QDTNCSGFLG TIEVLAIAAL
101: QLIEKNVVAM IGPQSSGIAH VISHAVNELH VPLLTFAATD PTLSPLQYPY LIRTTQNDDF QMKAIADIIS NYGWREVIAI FVDDDYGRGG ITALEDALAK
201: KRSKISYKAP FSPNADTSVL NDLLVKVNLL ESRVYVVHVN PDSGLMIFSV AKSLGMMGSG YVWIASDWLA SVLDSTVPIN PDTTDLIQGT IVLRQHTADS
301: DLKRTFTSRW SNMVQNGTTT SSLNTYALYA YDSVWLLAHA LDHSLHLTAL KYFDSGDKLL KQLLLTDFTG VTGHVKFNSD GNMIHPAYDI LNILGPVPRR
401: LGFWSNYSGL SLHSVIWPGD TTTRPRGWVF PNNGKPLRIG VPYRTSYKEF VTKDDGPDVV KGYCIDVFKA AVNLLPYPVP YSVILFGDGL KNPNYNDLVE
501: KVSQNYFDAA VGDISIVTNR TRIVDFTQPY IESGLVIVAP VKERTSSPWA FLKPFTIQMW GVTGAFFLFV GAVVWILEHR TNTEFRGSPR QQLVTIFWFS
601: FSTMFFAHRE NTGSTLGRFV LIIWLFVVLI INSSYTASLT SILTVQQLSS GIQGLDSLIS SSDPIGYQVG SFAKNYMMEE LNIAESRLIS LNNPEAYARA
701: LELGPKNGGV AAIVDELPYI EIFLSNNCKY TTVGQEFTKS GWGFAFPRDS PLAVDLSTAI LTLSENGDLQ RIHDKWLART GCSSQDNEID SNRLSLGSFW
801: GLFLICGLAC LLALIVFFMR IFCQYSRYSS QDDVGSIDPE RSFRRPMRLT SIKDLISFVD KKEEEVKCAI KRKSSDKQQQ SSQVTNEQSM SPA

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.