Factsheet for Solyc07g052400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g045650.2.1
Solyc07g052400.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	Solyc05g045650.2.1	AT1G05200.1	23590882
AT1G05200.1	Solyc07g052400.2.1	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065539	Potato	plasma membrane	96.55	83.21
Solyc05g045650.2.1	Tomato	plasma membrane	79.16	73.2
VIT_12s0059g02270.t01	Wine grape	plasma membrane	69.54	61.04
CDY06165	Canola	plasma membrane	63.87	59.47
KRH26793	Soybean	plasma membrane	67.94	58.18
KRH25388	Soybean	plasma membrane	66.09	58.01
KRH22559	Soybean	plasma membrane	67.57	57.87
KRH56121	Soybean	plasma membrane	65.97	57.59
GSMUA_Achr9P11690_001	Banana	plasma membrane	62.52	56.77
CDY46839	Canola	plasma membrane	65.84	56.15
GSMUA_Achr9P02750_001	Banana	plasma membrane	63.26	55.94
Bra015398.1-P	Field mustard	plasma membrane	65.6	55.94
CDY49512	Canola	plasma membrane	65.23	55.51
AT1G05200.1	Thale cress	plasma membrane	65.6	55.47
CDY10044	Canola	plasma membrane	64.0	55.27
GSMUA_Achr6P00460_001	Banana	plasma membrane	62.52	54.81
Bra032480.1-P	Field mustard	plasma membrane	64.12	54.11
AT2G32390.5	Thale cress	plasma membrane	63.5	54.04
Bra005589.1-P	Field mustard	plasma membrane	62.89	53.97
Os06t0680500-01	Rice	cytosol, plasma membrane	59.19	53.93
TraesCS2A01G257200.1	Wheat	plasma membrane	60.67	52.96
TraesCS2D01G265700.1	Wheat	plasma membrane	60.42	52.92
TraesCS2B01G285400.1	Wheat	plasma membrane	60.42	52.8
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	58.2	52.5
Zm00001d014458_P001	Maize	plasma membrane	58.57	51.63
HORVU1Hr1G086120.3	Barley	plasma membrane	59.06	51.34
Zm00001d014451_P001	Maize	plasma membrane	59.93	51.32
EER90229	Sorghum	plasma membrane	58.08	50.86
TraesCS1A01G390300.2	Wheat	plasma membrane	58.69	50.75
TraesCS1D01G398500.1	Wheat	plasma membrane	58.32	50.53
TraesCS1B01G418500.1	Wheat	plasma membrane	58.32	50.48
KXG20638	Sorghum	plasma membrane	59.56	50.31
TraesCS7A01G455200.1	Wheat	plasma membrane	57.83	50.21
Os07t0103100-01	Rice	plasma membrane	59.06	50.1
TraesCS7B01G355500.1	Wheat	plasma membrane	57.71	50.05
HORVU7Hr1G104490.2	Barley	golgi, plasma membrane	57.58	49.95
EER97313	Sorghum	plasma membrane	56.72	49.78
Zm00001d006508_P003	Maize	plasma membrane	56.35	49.51
CDY12211	Canola	plasma membrane	54.25	49.49
Zm00001d018614_P003	Maize	plastid	58.45	49.43
CDY66698	Canola	plasma membrane	54.13	49.38
HORVU2Hr1G045730.6	Barley	plasma membrane	56.23	49.24
TraesCS2B01G246200.1	Wheat	plasma membrane	53.88	48.77
TraesCS2D01G226400.1	Wheat	plasma membrane	55.61	48.7
CDX84735	Canola	plasma membrane	53.27	48.65
EER95720	Sorghum	plastid	58.32	48.61
KXG20640	Sorghum	plasma membrane	55.73	48.6
TraesCS7D01G444100.2	Wheat	plasma membrane	57.83	48.55
TraesCS2A01G220700.1	Wheat	plasma membrane	55.49	48.49
Zm00001d014456_P001	Maize	plasma membrane	54.87	48.11
Solyc04g082610.2.1	Tomato	plasma membrane	54.99	48.06
CDY48271	Canola	plastid	43.28	47.5
Zm00001d018615_P001	Maize	plasma membrane	55.86	47.19
Solyc02g082480.2.1	Tomato	plasma membrane	55.73	47.18
EER95721	Sorghum	plastid	54.13	44.75
Solyc07g052390.2.1	Tomato	nucleus	46.49	43.48
Solyc06g063170.2.1	Tomato	cytosol	34.4	30.53
Solyc08g006500.2.1	Tomato	extracellular	35.14	29.35
Solyc06g063190.2.1	Tomato	plasma membrane	35.14	28.85
Solyc06g063210.2.1	Tomato	mitochondrion, plasma membrane	34.16	28.47
Solyc06g063200.1.1	Tomato	plasma membrane	33.66	27.94
Solyc06g063180.1.1	Tomato	plasma membrane	32.55	27.24
Solyc02g077290.1.1	Tomato	nucleus	29.84	26.16
GSMUA_Achr5P00750_001	Banana	mitochondrion	59.56	25.8
Solyc04g078860.2.1	Tomato	plasma membrane	25.15	24.26

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004930	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0007186	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:GPCR_3	InterPro:Iontro_rcpt
InterPro:Iontropic_Glu_rcpt_pln	UniProt:K4CFD9	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090
PRINTS:PR00248	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822
SUPFAM:SSF53850	InterPro:Solute-binding_3/MltF_N	EnsemblPlantsGene:Solyc07g052400.2	EnsemblPlants:Solyc07g052400.2.1	TMHMM:TMhelix	UniParc:UPI000276B820
SEG:seg	:	:	:	:	:

Description

Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:K4CFD9]

Coordinates

chr7:+:60921179..60924690

Molecular Weight (calculated)

91132.6 Da

IEP (calculated)

6.466

GRAVY (calculated)

-0.103

Length

811 amino acids

Sequence
(BLAST)

001: MNELQVPLLS FATDPTLSSL QYSYFLRTVP NDHFQMHAIA DVVDYFGWKE VIAIFVDDDN GRNGISVLGD ALAKKRAKLT YKAAFSPEAN SSEIDDLLVS
101: VNLMEARVFV VHVNPDTGLS IFSKAKNLGM MVGGYVWITT DWLPSFLDSS DSVNPETMDL IQGVVALRHH TADSDQKKKF ASRWKNFKNV ETSSFNSYAL
201: YAYDTIWLLA RALDLYFKNG GKITFSDDPR LRDTNGSALH LSSMQVFDQG QKLFQTLIGM NFTGLSGQIQ FDSEKNLGRP AYDVLNIGGT GSRTVGYWSN
301: YSSLSVVPPE ILYSKPPNTS TSTQHLYNVI WPGEMVTQPR GWVFPHNGKP LRIVVPYRVT FKEFVHKDKG PSGVKGYCID VFEAAIDLLP YAVPHVYILY
401: GDGQRNPSFK NLVNDVVANK YDAAVGDVTI TTNRTRIVDF TQPYMESGLV VVAPIKELKS SAWAFLQPFT LQMWCVTGVF FLFVGTVVWI LEHRHNPEFR
501: GSPRQQLVTV FWFSFSTMFF AHRENTMSTL GRLVLIFWLF VVLIINSSYT ASLTSILTVR QLSSGIQGID SLIASSDPIG VQDGSFAYSY LIEELGVLES
601: RLRILKTEDE YTSALEKGPQ GGGVAGIVDE LPYVELFLSN SNCVFRTVGQ EFTKGGWGFA FQRDSPLAVD LSTAILQLSE NGELQRIHDK WLSKKVCSSQ
701: SNQADDSQLS LKSFWGLFLI CAVACFLALV AFFYRVYCQF RRYDPEPEDQ EISEPESVRP SRRTLRSVSF RDLMTFVDRR ESEIKDILKR KSIDSKKHQG
801: QSSDAQPSSP V

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.