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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY06165
CDY10044
CDY46839
CDY49512

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G05200.1 CDY06165 AT1G05200.1 23590882
AT1G05200.1 CDY10044 AT1G05200.1 23590882
AT1G05200.1 CDY46839 AT1G05200.1 23590882
AT1G05200.1 CDY49512 AT1G05200.1 23590882
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra015398.1-P Field mustard plasma membrane 99.16 99.16
CDY49512 Canola plasma membrane 96.53 96.33
CDY06165 Canola plasma membrane 81.6 89.09
CDY10044 Canola plasma membrane 87.07 88.18
AT1G05200.1 Thale cress plasma membrane 86.86 86.13
CDY66698 Canola plasma membrane 65.51 70.08
CDX84735 Canola plasma membrane 65.3 69.93
CDY48271 Canola plastid 54.05 69.55
Solyc05g045650.2.1 Tomato plasma membrane 61.51 66.7
Solyc07g052400.2.1 Tomato cytosol 56.15 65.84
VIT_12s0059g02270.t01 Wine grape plasma membrane 63.72 65.58
PGSC0003DMT400065539 Potato plasma membrane 63.41 64.08
CDY12211 Canola plasma membrane 59.73 63.89
KRH25388 Soybean plasma membrane 61.72 63.53
KRH26793 Soybean plasma membrane 63.2 63.46
KRH56121 Soybean plasma membrane 61.51 62.97
PGSC0003DMT400013497 Potato plasma membrane 62.78 62.91
KRH22559 Soybean plasma membrane 62.57 62.83
GSMUA_Achr9P11690_001 Banana plasma membrane 57.31 61.03
GSMUA_Achr9P02750_001 Banana plasma membrane 57.31 59.43
GSMUA_Achr9P30180_001 Banana mitochondrion, plasma membrane 55.94 59.18
GSMUA_Achr6P00460_001 Banana plasma membrane 56.05 57.62
Zm00001d014451_P001 Maize plasma membrane 56.47 56.71
Os06t0680500-01 Rice cytosol, plasma membrane 53.0 56.63
TraesCS2D01G265700.1 Wheat plasma membrane 54.99 56.48
TraesCS2B01G285400.1 Wheat plasma membrane 54.99 56.36
HORVU1Hr1G086120.3 Barley plasma membrane 55.1 56.16
TraesCS2A01G257200.1 Wheat plasma membrane 54.78 56.08
HORVU7Hr1G104490.2 Barley golgi, plasma membrane 55.1 56.04
TraesCS7A01G455200.1 Wheat plasma membrane 54.78 55.78
TraesCS1D01G398500.1 Wheat plasma membrane 54.89 55.77
KXG20638 Sorghum plasma membrane 56.26 55.73
TraesCS7B01G355500.1 Wheat plasma membrane 54.36 55.29
TraesCS1A01G390300.2 Wheat plasma membrane 54.47 55.22
EER97313 Sorghum plasma membrane 53.63 55.19
TraesCS1B01G418500.1 Wheat plasma membrane 54.26 55.07
Zm00001d014458_P001 Maize plasma membrane 53.21 55.0
EER90229 Sorghum plasma membrane 53.42 54.86
Zm00001d006508_P003 Maize plasma membrane 53.21 54.82
KXG20640 Sorghum plasma membrane 53.52 54.73
CDY35797 Canola plasma membrane 46.69 54.01
TraesCS2D01G226400.1 Wheat plasma membrane 52.58 54.0
Zm00001d014456_P001 Maize plasma membrane 52.47 53.95
TraesCS7D01G444100.2 Wheat plasma membrane 54.78 53.93
TraesCS2B01G246200.1 Wheat plasma membrane 50.79 53.91
Zm00001d018614_P003 Maize plastid 53.84 53.39
HORVU2Hr1G045730.6 Barley plasma membrane 51.95 53.35
TraesCS2A01G220700.1 Wheat plasma membrane 52.05 53.34
EER95720 Sorghum plastid 54.36 53.13
Os07t0103100-01 Rice plasma membrane 53.0 52.72
CDX73718 Canola plasma membrane 48.16 51.4
CDX78008 Canola plasma membrane 48.05 51.29
CDY24327 Canola plasma membrane 48.9 50.99
CDX69127 Canola plasma membrane 48.69 50.77
CDY52597 Canola plasma membrane 48.48 50.55
Zm00001d018615_P001 Maize plasma membrane 50.89 50.42
CDY65624 Canola plasma membrane 45.95 50.23
CDX76331 Canola plasma membrane 47.53 49.67
CDY68928 Canola extracellular, plasma membrane 27.66 49.34
CDY71348 Canola golgi, plasma membrane 13.67 49.06
CDY70557 Canola extracellular, plasma membrane 27.44 48.97
CDX95758 Canola cytosol 20.4 47.67
CDX75491 Canola cytosol, plasma membrane, plastid 10.2 47.55
EER95721 Sorghum plastid 49.0 47.5
CDY15337 Canola plasma membrane 41.22 43.85
CDX80728 Canola cytosol 11.15 43.8
CDY12210 Canola plasma membrane 42.17 43.54
CDX75490 Canola extracellular, plasma membrane, vacuole 26.6 43.47
CDX84734 Canola plasma membrane 42.27 43.41
CDY48270 Canola plasma membrane 42.06 43.38
CDY66699 Canola plasma membrane 42.06 43.2
CDY31759 Canola cytosol, peroxisome, plasma membrane 15.98 32.27
CDY58212 Canola cytosol, plasma membrane 28.18 32.13
CDY70035 Canola cytosol, plasma membrane 26.6 31.27
CDY54213 Canola plasma membrane 29.02 31.05
CDY31756 Canola cytosol, peroxisome, plastid 27.97 30.65
CDY31755 Canola cytosol 29.55 30.44
CDY00544 Canola plasma membrane 24.71 30.17
CDX72325 Canola plasma membrane 21.24 29.97
CDY36173 Canola plasma membrane 25.24 29.78
CDY56837 Canola plasma membrane 28.6 29.63
CDY39533 Canola plasma membrane 29.97 29.35
CDY38574 Canola plasma membrane 29.76 29.27
CDY51113 Canola plasma membrane 26.39 29.22
CDY45595 Canola plasma membrane 26.39 29.19
CDX73196 Canola cytosol, peroxisome, plasma membrane 27.87 29.03
CDX85724 Canola plasma membrane 26.08 28.87
CDY50141 Canola plasma membrane 16.09 28.87
GSMUA_Achr5P00750_001 Banana mitochondrion 55.2 28.04
CDY68132 Canola plasma membrane 29.02 27.35
CDY13449 Canola cytosol 26.5 26.28
CDY63640 Canola cytosol 13.67 23.94
CDY72467 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.287.70MapMan:24.3.9Gene3D:3.40.190.10Gene3D:3.40.50.2300GO:A0A078IBV2UniProt:A0A078IBV2
InterPro:ANF_lig-bd_rcptEnsemblPlants:CDY46839ProteinID:CDY46839ProteinID:CDY46839.1GO:GO:0003674GO:GO:0004871
GO:GO:0004970GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006811GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0035235
GO:GO:0038023EnsemblPlantsGene:GSBRNA2T00086284001InterPro:Iontro_rcptInterPro:Iontropic_Glu_rcpt_plnPFAM:PF00060PFAM:PF00497
PFAM:PF01094PIRSF:PIRSF037090PRINTS:PR01176PANTHER:PTHR43891PANTHER:PTHR43891:SF12InterPro:Peripla_BP_I
SMART:SM00079SUPFAM:SSF53822SUPFAM:SSF53850SignalP:SignalP-noTMInterPro:Solute-binding_3/MltF_NTMHMM:TMhelix
UniParc:UPI0004EDC8A5SEG:seg::::
Description
BnaA10g03230DGlutamate receptor [Source:UniProtKB/TrEMBL;Acc:A0A078IBV2]
Coordinates
chrLK032687:+:38471..42283
Molecular Weight (calculated)
106161.0 Da
IEP (calculated)
8.284
GRAVY (calculated)
-0.088
Length
951 amino acids
Sequence
(BLAST)
001: MRGVSMVKAM RIILLCVSVL WIFPEECAGK SNFSRNSSSS TASPPLSQTP NSVNVGALFT YDSFIGRAAK PAFKAAMDDV NADQTVLKGT KLNIVYQDSN
101: CSGFIGTMGA LQLMETQVVA AIGPQSSSIA HMISYVANEL HVPLLSFAAT DPTLSSLQYP YFLRTTQNDH FQMHAVADLV SYSGWRQVIA IFVDDECGRN
201: GVSVLGDALA KKRARISHKA AITPGADATS IKDLLVSVNL MASRVYVVHV NPDSGLNVFS VAKALGMMGN GYVWITTDWL PTVLDSMGAV DAETMDLLQG
301: VVAFRHYTAE SDAKRRFMER WRNLRPKEGL NSYSLYAYDS VWLIARALDV FFRENNKVTF SNDPNLHKTK SSSLRLSALS VFNEGERFLE IILGMNHTGL
401: TGPIRFDSER NRVNPAYEVL NIEGTGPRRV GYWSNHSGLS VVPPETLYSK PPNTSTANQR LYGIIWPGEV TKPPRGWVFP NNGKPLKIAV PNRVSYKDYV
501: SKDKNPPGVR GYCIDVFEAA IELLPYPVPR NYILYGDGKK NPSYDNLINE VVADNFDVAV GDITIVTNRT RFVDFTQPFI ESGLVVVAPV KEAKSSPWSF
601: LKPFTIEMWA VTGAFFLFVG AIVWILEHRF NHEFRGPPRR QLITIFWFSF STMFFSHREN TVSSLGRLVL IIWLFVVLII NSSYTASLTS ILTVQQLTSR
701: IEGIDSLITS NEPIGVQDGT FARNYLVNEL NISPHRIVPL RDEEHYLSAL QLGPKAGGVA AIVDELPYIE VLLTNSNCKY RTVGQEFTRT GWGFAFQRDS
801: PLAVDMSTAI LQLSEEGELE KIHRKWLNYK HECSMQIQNS ETSQLSLKSF WGLFLICGIT CFIALTLFFW RVFWQYQRLL PDTGDEERAS EVTEGSRSGR
901: GLRAPSFKEL VKIVDKREAE IKEILKQKSS NKLKSSQSGA GSSHSQHSEI P
Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)
001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT
Arabidopsis Description
GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.