Factsheet for GSMUA_Achr6P00460_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P00750_001
GSMUA_Achr6P00460_001
GSMUA_Achr9P02750_001
GSMUA_Achr9P11690_001
GSMUA_Achr9P30180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	GSMUA_Achr5P00750_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr6P00460_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P02750_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P11690_001	AT1G05200.1	23590882
AT1G05200.1	GSMUA_Achr9P30180_001	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11690_001	Banana	plasma membrane	70.59	73.12
GSMUA_Achr9P02750_001	Banana	plasma membrane	71.35	71.97
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	62.59	64.4
VIT_12s0059g02270.t01	Wine grape	plasma membrane	62.59	62.66
Solyc07g052400.2.1	Tomato	cytosol	54.81	62.52
TraesCS2D01G226400.1	Wheat	plasma membrane	62.27	62.2
HORVU2Hr1G045730.6	Barley	plasma membrane	62.16	62.09
TraesCS2A01G220700.1	Wheat	plasma membrane	62.05	61.85
TraesCS2B01G246200.1	Wheat	plasma membrane	59.89	61.83
Solyc05g045650.2.1	Tomato	plasma membrane	58.59	61.8
EER97313	Sorghum	plasma membrane	61.51	61.58
Zm00001d006508_P003	Maize	plasma membrane	60.76	60.89
PGSC0003DMT400065539	Potato	plasma membrane	61.41	60.36
KRH56121	Soybean	plasma membrane	59.78	59.53
KRH25388	Soybean	plasma membrane	59.46	59.52
KRH26793	Soybean	plasma membrane	60.65	59.24
KRH22559	Soybean	plasma membrane	60.43	59.03
PGSC0003DMT400013497	Potato	plasma membrane	60.11	58.59
CDY06165	Canola	plasma membrane	54.16	57.52
GSMUA_Achr9P23900_001	Banana	plasma membrane	56.97	57.41
GSMUA_Achr3P27050_001	Banana	plasma membrane	56.76	57.38
GSMUA_Achr5P19180_001	Banana	plasma membrane	54.81	56.33
CDY46839	Canola	plasma membrane	57.62	56.05
CDY10044	Canola	plasma membrane	56.86	56.02
Bra015398.1-P	Field mustard	plasma membrane	57.51	55.94
CDY49512	Canola	plasma membrane	57.41	55.72
AT2G32390.5	Thale cress	plasma membrane	57.3	55.61
AT1G05200.1	Thale cress	plasma membrane	57.62	55.58
Bra032480.1-P	Field mustard	plasma membrane	56.32	54.21
Bra005589.1-P	Field mustard	plasma membrane	55.14	53.97
CDY66698	Canola	plasma membrane	47.89	49.83
GSMUA_Achr5P00740_001	Banana	plasma membrane	46.27	49.83
CDX84735	Canola	plasma membrane	47.35	49.32
CDY48271	Canola	plastid	38.81	48.58
CDY12211	Canola	plasma membrane	44.54	46.34
GSMUA_Achr6P26740_001	Banana	cytosol, plasma membrane, plastid	25.3	35.4
GSMUA_Achr7P16350_001	Banana	cytosol, peroxisome, plasma membrane	27.68	35.12
GSMUA_AchrUn_...	Banana	golgi	31.14	33.8
GSMUA_Achr6P01870_001	Banana	cytosol	31.57	33.33
GSMUA_Achr4P02110_001	Banana	cytosol	28.86	33.04
GSMUA_Achr3P04970_001	Banana	plasma membrane	33.73	32.6
GSMUA_Achr9P13570_001	Banana	plasma membrane	31.24	31.69
GSMUA_Achr5P00750_001	Banana	mitochondrion	63.46	31.36
GSMUA_Achr2P15450_001	Banana	plasma membrane	25.3	29.43
GSMUA_Achr4P30920_001	Banana	plasma membrane	24.43	28.75
GSMUA_Achr6P01860_001	Banana	cytosol, peroxisome, plasma membrane	28.86	27.64

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0035235	GO:GO:0038023	EnsemblPlantsGene:GSMUA_Achr6G00460_001	EnsemblPlants:GSMUA_Achr6P00460_001	EnsemblPlants:GSMUA_Achr6T00460_001	InterPro:Iontro_rcpt
InterPro:Iontropic_Glu_rcpt_pln	UniProt:M0T2Z4	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090
PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822
SUPFAM:SSF53850	SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI00029619CF	SEG:seg

Description

Glutamate receptor 3.4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00460_001]

Coordinates

chr6:+:310353..315375

Molecular Weight (calculated)

102172.0 Da

IEP (calculated)

5.106

GRAVY (calculated)

-0.010

Length

925 amino acids

Sequence
(BLAST)

001: MVSVPLLALC FSVSLVGTVA GSGNIASWPS AVNVGALFTF DSTIGRAAKL AIELAVEDVN SSPSVLAGTR LNLYAQDTYC SGFFGIIESL QLIEKNVVAI
101: IGPQSSGIAH VVSHVANELH VPLLSFAATD PALSSLEHSY FIRMTQSDYF QMNAIADLVG NYGWREVTAI FTDDDFGRGG IDALGDALAK RHTKISYKAA
201: IPPNANESAI DDLLVRVNFM ESRIYVVHVN PDSGLKVFSI AKYRGMMATG YVWITSDWLT SVLDSFGSPN PDTMDLIQGV IALRQHVPDS DVKQSFISRW
301: SDMRRRGNTT SSLNTYALYA YDSVWLVAHA IDQLLKGGQT FNFSDDPKLQ DANGSSLHLT AIKNFNTGDN LLHELLLTKF TGLTGQVQFD SDGNLIHPAY
401: DILNIGGTGF RRIGFWSNYS GLSVISPESL YSKRPNTSDG SQQLYSVIWP GETMTTPRGW VFPNSGKSLR IGVPYRTSFT EFVSKDNGPD NVKGYCIDVF
501: KAAVNLLPYP VPLSFILFGN GSKNPSYDEL VEKVHENYFD AAVGDISIVT NRTRIVDFTQ PYAESGLVIV APAKEQHSNA WAFLKPFNTT MWCATGAFFL
601: FVGLVVWILE HRLNQDFRGS PKQQIATIFW FSLSTMFFAH RETTVSTLGR FVLIVWMFVV LIINSSYTAN LTSILTVQQL SSRIAGIDTL MSGSDPIGYQ
701: VGSFSKNYMI EDLNIDESRL VPLNDPDEYA RALDLGPRGG GVAAIVDELP YIEVFLSDNC KYITVGQEFT KSGWGFAFPR DSPLALDLST AILTLSENGD
801: LQRIHDKWLT QSGCTSQDSD TDSNQLSFAS FWGLFLICGL ACLMALMIFF LKTLCQYRKY STQAKVGCSE SERSVECTSY IKELLSFVDK KEEDVKKFMK
901: SKSSEKQQQN QQDSDGQSMS NKFEI

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.