Factsheet for Bra015398.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015398.1-P
Bra032480.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	Bra015398.1-P	AT1G05200.1	23590882
AT1G05200.1	Bra032480.1-P	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46839	Canola	plasma membrane	99.16	99.16
Bra032480.1-P	Field mustard	plasma membrane	87.59	86.68
AT1G05200.1	Thale cress	plasma membrane	87.38	86.65
Bra005589.1-P	Field mustard	plasma membrane	75.92	76.4
Solyc05g045650.2.1	Tomato	plasma membrane	61.62	66.82
Solyc07g052400.2.1	Tomato	cytosol	55.94	65.6
VIT_12s0059g02270.t01	Wine grape	plasma membrane	63.72	65.58
PGSC0003DMT400065539	Potato	plasma membrane	63.3	63.97
KRH25388	Soybean	plasma membrane	61.93	63.74
KRH26793	Soybean	plasma membrane	63.3	63.57
KRH56121	Soybean	plasma membrane	61.72	63.19
PGSC0003DMT400013497	Potato	plasma membrane	62.88	63.01
KRH22559	Soybean	plasma membrane	62.67	62.94
GSMUA_Achr9P11690_001	Banana	plasma membrane	57.73	61.48
GSMUA_Achr9P02750_001	Banana	plasma membrane	57.62	59.76
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	56.05	59.29
GSMUA_Achr6P00460_001	Banana	plasma membrane	55.94	57.51
TraesCS2D01G265700.1	Wheat	plasma membrane	55.31	56.8
TraesCS2B01G285400.1	Wheat	plasma membrane	55.31	56.68
Os06t0680500-01	Rice	cytosol, plasma membrane	53.0	56.63
Zm00001d014451_P001	Maize	plasma membrane	56.36	56.6
TraesCS2A01G257200.1	Wheat	plasma membrane	55.1	56.4
HORVU1Hr1G086120.3	Barley	plasma membrane	54.89	55.95
HORVU7Hr1G104490.2	Barley	golgi, plasma membrane	54.99	55.94
KXG20638	Sorghum	plasma membrane	56.36	55.83
TraesCS1D01G398500.1	Wheat	plasma membrane	54.89	55.77
TraesCS7A01G455200.1	Wheat	plasma membrane	54.68	55.67
EER97313	Sorghum	plasma membrane	53.94	55.52
TraesCS1A01G390300.2	Wheat	plasma membrane	54.47	55.22
Zm00001d014458_P001	Maize	plasma membrane	53.42	55.22
TraesCS7B01G355500.1	Wheat	plasma membrane	54.26	55.19
Zm00001d006508_P003	Maize	plasma membrane	53.52	55.15
EER90229	Sorghum	plasma membrane	53.63	55.08
TraesCS1B01G418500.1	Wheat	plasma membrane	54.26	55.07
KXG20640	Sorghum	plasma membrane	53.63	54.84
TraesCS2D01G226400.1	Wheat	plasma membrane	52.89	54.32
TraesCS2B01G246200.1	Wheat	plasma membrane	51.1	54.24
Zm00001d014456_P001	Maize	plasma membrane	52.47	53.95
TraesCS7D01G444100.2	Wheat	plasma membrane	54.68	53.83
Zm00001d018614_P003	Maize	plastid	54.15	53.7
HORVU2Hr1G045730.6	Barley	plasma membrane	52.26	53.67
TraesCS2A01G220700.1	Wheat	plasma membrane	52.37	53.66
EER95720	Sorghum	plastid	54.68	53.44
Os07t0103100-01	Rice	plasma membrane	53.31	53.03
Bra034931.1-P	Field mustard	plasma membrane	50.68	51.88
Bra036795.1-P	Field mustard	plasma membrane	48.05	51.29
Bra011603.1-P	Field mustard	plasma membrane	49.21	51.26
Zm00001d018615_P001	Maize	plasma membrane	51.21	50.73
EER95721	Sorghum	plastid	49.11	47.6
Bra005591.1-P	Field mustard	plasma membrane	42.17	43.49
Bra020812.1-P	Field mustard	plasma membrane	40.48	37.97
Bra040758.1-P	Field mustard	cytosol, peroxisome, plasma membrane	20.08	32.21
Bra032072.1-P	Field mustard	plasma membrane	30.28	32.14
Bra018409.1-P	Field mustard	cytosol, nucleus, plasma membrane	30.18	30.73
Bra040760.1-P	Field mustard	cytosol	26.92	30.4
Bra040761.1-P	Field mustard	cytosol	29.65	30.29
Bra032063.1-P	Field mustard	plasma membrane	29.02	29.9
Bra023313.1-P	Field mustard	plasma membrane	26.08	28.87
GSMUA_Achr5P00750_001	Banana	mitochondrion	55.1	27.99
Bra015817.1-P	Field mustard	plasma membrane	29.13	27.45
Bra023989.1-P	Field mustard	cytosol	25.87	24.97
Bra022887.1-P	Field mustard	plasma membrane	42.69	21.86

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	EnsemblPlantsGene:Bra015398
EnsemblPlants:Bra015398.1	EnsemblPlants:Bra015398.1-P	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt
InterPro:Iontropic_Glu_rcpt_pln	UniProt:M4DFX5	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090
PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822
SUPFAM:SSF53850	SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI0002543AC9	SEG:seg

Description

AT1G05200 (E=0.0) ATGLR3.4, GLR3.4, GLUR3 | ATGLR3.4; intracellular ligand-gated ion channel

Coordinates

chrA10:-:2072590..2075666

Molecular Weight (calculated)

106148.0 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.084

Length

951 amino acids

Sequence
(BLAST)

001: MRGVSMVKAM RIILLCVSVL WIFPEECAGK SNFSRNSSSS TASPPLSQTP NSVNVGALFT YDSFIGRAAK PAFKAAMDDV NADQTVLKGT KLNIVFQDSN
101: CSGFIGTMGA LQLMETQVVA AIGPQSSSIA HMISYVANEL HVPLLSFAAT DPTLSSLQYP YFLRTTQNDH FQMHAVADLV SYSGWRQVIA IFVDDECGRN
201: GVSVLGDALA KKRARISHKA AITPGADATS IKDLLVSVNL MASRVYVVHV NPDSGLNVFS VAKSLGMMGS GYVWISTDWL PTVLDSMGAV DTETMDLLQG
301: VVAFRHYTAE SDAKRRFMER WRNLRPKEGL NSYALYAYDS VWLIARALDV FFRENNRVTF SNDPNLHKTK SSSLRLSALS VFNEGERFLE IILGMNHTGV
401: TGPIRFDSER NRVNPAYEVL NIEGTGPRRV GYWSNHSGLS VVPPETLYSK PPNTSTANQR LYGIIWPGEV TKPPRGWVFP NNGKPLKIAV PNRVSYKDYV
501: SKDKNPPGVR GYCIDVFEAA IELLPYPVPR NYILYGDGKK NPSYDNLINE VVADNFDVAV GDITIVTNRT RFVDFTQPFI ESGLVVVAPV KEAKSSPWSF
601: LKPFTIEMWA VTGAFFLFVG AIVWILEHRF NHEFRGPPRR QLITIFWFSF STMFFSHREN TVSSLGRLVL IIWLFVVLII NSSYTASLTS ILTVQQLTSR
701: IEGIDSLITS NEPIGVQDGT FARNYLVNEL NISPHRIVPL RDEEHYLSAL QLGPKAGGVA AIVDELPYIE VLLTNSNCKY RTVGQEFTRT GWGFAFQRDS
801: PLAVDMSTAI LQLSEEGELE KIHRKWLNYK HECSMQIQNS ETSQLSLKSF WGLFLICGIT CFIALTLFFW RVFWQYQRLL PDTGDEERAS EVTEGSRSGR
901: GLRAPSFKEL VKIVDKREAE IKEILKQKSS NKLKSSQSGA GSSHSQHSEI P

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.