Factsheet for PGSC0003DMT400013497

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013497
PGSC0003DMT400065539

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	PGSC0003DMT400013497	AT1G05200.1	23590882
AT1G05200.1	PGSC0003DMT400065539	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g045650.2.1	Tomato	plasma membrane	89.88	97.26
PGSC0003DMT400065539	Potato	plasma membrane	78.08	78.75
VIT_12s0059g02270.t01	Wine grape	plasma membrane	68.28	70.13
KRH25388	Soybean	plasma membrane	65.12	66.88
KRH56121	Soybean	plasma membrane	65.12	66.52
KRH26793	Soybean	plasma membrane	65.23	65.36
KRH22559	Soybean	plasma membrane	64.91	65.05
CDY06165	Canola	plasma membrane	59.54	64.87
GSMUA_Achr9P11690_001	Banana	plasma membrane	60.48	64.28
CDY49512	Canola	plasma membrane	63.33	63.06
Bra015398.1-P	Field mustard	plasma membrane	63.01	62.88
CDY46839	Canola	plasma membrane	62.91	62.78
AT1G05200.1	Thale cress	plasma membrane	63.44	62.77
CDY10044	Canola	plasma membrane	61.96	62.62
Bra005589.1-P	Field mustard	plasma membrane	61.33	61.59
AT2G32390.5	Thale cress	plasma membrane	61.54	61.28
Bra032480.1-P	Field mustard	plasma membrane	61.96	61.19
GSMUA_Achr9P02750_001	Banana	plasma membrane	59.11	61.18
GSMUA_Achr6P00460_001	Banana	plasma membrane	58.59	60.11
GSMUA_Achr9P30180_001	Banana	mitochondrion, plasma membrane	56.59	59.73
TraesCS2D01G265700.1	Wheat	plasma membrane	57.85	59.29
TraesCS2B01G285400.1	Wheat	plasma membrane	57.96	59.27
TraesCS2A01G257200.1	Wheat	plasma membrane	57.85	59.1
Os06t0680500-01	Rice	cytosol, plasma membrane	55.11	58.76
EER97313	Sorghum	plasma membrane	56.8	58.33
Zm00001d014458_P001	Maize	plasma membrane	56.27	58.04
HORVU1Hr1G086120.3	Barley	plasma membrane	56.9	57.88
Zm00001d006508_P003	Maize	plasma membrane	56.27	57.85
TraesCS1D01G398500.1	Wheat	plasma membrane	56.9	57.69
HORVU2Hr1G045730.6	Barley	plasma membrane	56.27	57.67
TraesCS1B01G418500.1	Wheat	plasma membrane	56.9	57.63
TraesCS1A01G390300.2	Wheat	plasma membrane	56.9	57.57
Zm00001d014451_P001	Maize	plasma membrane	57.43	57.55
KXG20638	Sorghum	plasma membrane	58.06	57.4
TraesCS2B01G246200.1	Wheat	plasma membrane	54.06	57.25
CDY66698	Canola	plasma membrane	53.32	56.92
TraesCS2D01G226400.1	Wheat	plasma membrane	55.53	56.91
EER90229	Sorghum	plasma membrane	55.53	56.91
CDY48271	Canola	plastid	44.26	56.83
TraesCS7A01G455200.1	Wheat	plasma membrane	55.74	56.64
HORVU7Hr1G104490.2	Barley	golgi, plasma membrane	55.64	56.47
TraesCS7B01G355500.1	Wheat	plasma membrane	55.43	56.26
Zm00001d018614_P003	Maize	plastid	56.69	56.1
CDX84735	Canola	plasma membrane	52.48	56.08
TraesCS2A01G220700.1	Wheat	plasma membrane	54.79	56.03
Os07t0103100-01	Rice	plasma membrane	56.06	55.65
EER95720	Sorghum	plastid	56.8	55.4
KXG20640	Sorghum	plasma membrane	53.95	55.05
TraesCS7D01G444100.2	Wheat	plasma membrane	55.95	54.97
Zm00001d014456_P001	Maize	plasma membrane	53.32	54.7
PGSC0003DMT400025675	Potato	plasma membrane	53.53	54.56
Zm00001d018615_P001	Maize	plasma membrane	54.58	53.96
CDY12211	Canola	plasma membrane	49.32	52.64
EER95721	Sorghum	plastid	52.48	50.76
PGSC0003DMT400065543	Potato	plasma membrane	46.05	48.02
PGSC0003DMT400038012	Potato	plasma membrane	49.63	38.35
PGSC0003DMT400067658	Potato	plastid	30.24	33.65
PGSC0003DMT400068189	Potato	plasma membrane	30.45	32.66
PGSC0003DMT400068186	Potato	plasma membrane	31.09	31.62
PGSC0003DMT400027830	Potato	plasma membrane	26.55	29.72
PGSC0003DMT400023744	Potato	cytosol	26.87	29.18
GSMUA_Achr5P00750_001	Banana	mitochondrion	57.43	29.11
PGSC0003DMT400059098	Potato	golgi	26.87	27.33
PGSC0003DMT400020569	Potato	cytosol	22.34	26.8

Protein Annotations

Gene3D:1.10.287.70	EntrezGene:102587316	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt
ncoils:Coil	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln
UniProt:M1A2X7	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	EnsemblPlantsGene:PGSC0003DMG400005267	PGSC:PGSC0003DMG400005267
EnsemblPlants:PGSC0003DMT400013497	PIRSF:PIRSF037090	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079
SUPFAM:SSF53822	SUPFAM:SSF53850	SignalP:SignalP-TM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI000295EE77
RefSeq:XP_006356916.2	RefSeq:XP_006356917.2	SEG:seg	:	:	:

Description

Glutamate receptor 3 plant [Source:PGSC_GENE;Acc:PGSC0003DMG400005267]

Coordinates

chr5:+:42255773..42261566

Molecular Weight (calculated)

105449.0 Da

IEP (calculated)

8.074

GRAVY (calculated)

0.014

Length

949 amino acids

Sequence
(BLAST)

001: MDAQVKRRVF LLLVSCIWVP MAVLGGTENV TVSSLSRPKV VKFGALFTVN SVIGSSVMPA ILAAVDDVNA DSTVLSGTKL DVITQDTNCS GFIGTIDALQ
101: LMEKEVVVAV GPQSSGIAHV ISHVVNELRV PLLSFATDPT LSSLQYQYFL RTVTNDYFQM YAIADLVDYY GWKEVIAIFV DDDNGRNGIS VLGDALAKKR
201: AKISYKAAFS PGATMSDIDD LLVSVNLMEA RVYIVHVNPD TGLSFFSKAK KLGMMSSGYV WIATDWLPSV LDSSDSNKDT MDVLQGVVAL RHHTPDSDKK
301: KTFASRWKNL KSIQTSRFNS YALYAYDTVW LVARALDLFF KNGGNVTFSD DPSLRDTNGS ALKLSSLRVF DQGQKLLQIL VGMNFTGLTG QIQFDPQKDL
401: IHPAYDVLNV VGTGLRTIGY WSNYSGLSVI TPEVLYTKPA NTSTSNQHLY NAIWPGETIK RPRGWVFPNN GKPLRIAIPF RVTFEEFVKK DKGPAGVKGY
501: CIDVFEAAID LLAYPVPHVY ILYGDGKRNP SFNSIVNDVA QNKYDAAVGD IAITTNRTRI VDFTQPYMES GLVVVAPVKE TKSSPWAFFK PFTIQMWGVT
601: GVFFLFVGSV IWILEHRMNP EFRGPPRKQL ITVFWFSFST MFFAHRENTL STLGRCVLIF WLFVVLIINS SYTASLTSIL TVQKLSSGIA GIDSLISSPD
701: PIGVQDGSFA YNYLIDELHV PKSRLRIIKS EAEYVSALQQ GPKGGGVAAI VDELPYVELF LSNSKCIFRT VGQEFTKSGW GFAIWSTQRL ILTVFGQAFK
801: RDSPLAIDLS TAILQLSENG ELQRIHDKWL SNKECSSQNN QVDDTRLSLS SFWGLYVICG GACAVALVVF ICKVYCQFLR YDPETEEPEI SEPESARSSR
901: RSLRSRSFKD LMGFVDKREA EIKDMLKRKN SDNKKQISHS SDVQQNSPV

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.