Factsheet for PGSC0003DMT400038012

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 7
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g03920.t01	Wine grape	plasma membrane	47.39	63.47
KRH14012	Soybean	plasma membrane	46.74	62.73
AT4G35290.2	Thale cress	plasma membrane	42.83	57.68
Bra011603.1-P	Field mustard	plasma membrane	42.51	57.17
CDX76331	Canola	plasma membrane	42.35	57.14
CDX69127	Canola	plasma membrane	42.26	56.91
CDY65624	Canola	plasma membrane	40.15	56.67
CDY24327	Canola	plasma membrane	41.45	55.81
CDY52597	Canola	plasma membrane	41.29	55.59
AT2G17260.1	Thale cress	plasma membrane	41.29	54.81
CDY71348	Canola	golgi, plasma membrane	11.73	54.34
GSMUA_Achr3P27050_001	Banana	plasma membrane	39.82	53.44
PGSC0003DMT400025675	Potato	plasma membrane	40.47	53.38
GSMUA_Achr9P23900_001	Banana	plasma membrane	39.82	53.27
CDX75490	Canola	extracellular, plasma membrane, vacuole	25.08	52.92
GSMUA_Achr5P19180_001	Banana	plasma membrane	38.03	51.89
KRH74102	Soybean	cytosol, nucleus, peroxisome	26.87	50.85
PGSC0003DMT400065539	Potato	plasma membrane	38.35	50.05
CDX75491	Canola	cytosol, plasma membrane, plastid	8.31	50.0
HORVU0Hr1G018770.1	Barley	plasma membrane	32.65	49.94
PGSC0003DMT400013497	Potato	plasma membrane	38.35	49.63
TraesCS2B01G477300.4	Wheat	plasma membrane	36.81	49.18
TraesCS2D01G455600.2	Wheat	plasma membrane	36.81	49.18
TraesCS2A01G455200.2	Wheat	plasma membrane	36.65	48.97
Zm00001d015007_P003	Maize	plasma membrane	35.59	48.5
KXG29299	Sorghum	plasma membrane	36.56	48.49
KXG26996	Sorghum	plasma membrane	36.65	48.13
TraesCSU01G107900.1	Wheat	plasma membrane	36.24	48.06
TraesCS6B01G065700.1	Wheat	plasma membrane	36.07	48.0
Os02t0117500-01	Rice	plasma membrane	36.89	47.99
TraesCSU01G107700.2	Wheat	plasma membrane	36.16	47.95
Zm00001d002532_P003	Maize	plasma membrane	36.24	47.8
TraesCS6A01G049900.1	Wheat	plasma membrane	35.91	47.78
Os04t0585200-02	Rice	extracellular	21.01	47.78
TraesCS6B01G066200.1	Wheat	plasma membrane	35.83	47.77
OQU84212	Sorghum	mitochondrion	35.34	47.74
TraesCS6A01G048800.1	Wheat	plasma membrane	35.99	47.73
TraesCS6A01G049000.1	Wheat	plasma membrane	36.16	47.69
TraesCSU01G108800.1	Wheat	plasma membrane	35.83	47.67
HORVU6Hr1G009520.1	Barley	plasma membrane	35.91	47.62
TraesCS6A01G048700.1	Wheat	plasma membrane	35.91	47.62
TraesCS6B01G065500.1	Wheat	plasma membrane	35.91	47.62
HORVU2Hr1G104920.3	Barley	plasma membrane	36.81	47.58
TraesCS6B01G065400.1	Wheat	plasma membrane	35.83	47.52
TraesCSU01G108000.1	Wheat	plasma membrane	35.59	47.29
HORVU2Hr1G049510.4	Barley	plasma membrane	35.75	47.05
HORVU0Hr1G036590.3	Barley	plasma membrane	35.75	47.05
Zm00001d054016_P004	Maize	plasma membrane	36.07	46.58
Zm00001d033769_P001	Maize	golgi, plasma membrane	23.21	45.17
PGSC0003DMT400065543	Potato	plasma membrane	33.39	45.05
Bra020812.1-P	Field mustard	plasma membrane	35.59	43.1
PGSC0003DMT400068189	Potato	plasma membrane	23.45	32.54
PGSC0003DMT400067658	Potato	plastid	22.31	32.12
PGSC0003DMT400027830	Potato	plasma membrane	21.58	31.25
PGSC0003DMT400068186	Potato	plasma membrane	22.31	29.37
PGSC0003DMT400059098	Potato	golgi	22.07	29.05
PGSC0003DMT400023744	Potato	cytosol	20.36	28.6
PGSC0003DMT400020569	Potato	cytosol	18.24	28.32
Os02t0117600-01	Rice	plastid	0.33	1.65

Protein Annotations

KEGG:00260+2.7.1.39	Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.30.230.10	Gene3D:3.30.70.890	Gene3D:3.40.190.10
Gene3D:3.40.50.2300	MapMan:4.1.2.2.5	InterPro:ANF_lig-bd_rcpt	ncoils:Coil	InterPro:GHMP_kinase_C_dom	InterPro:GHMP_kinase_C_sf
InterPro:GHMP_kinase_N_dom	InterPro:GHMP_knse_ATP-bd_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004413
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006566	GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0035235	GO:GO:0038023	InterPro:Homoserine_kinase	InterPro:IPR014721	InterPro:IPR036554
InterPro:Iontro_rcpt	UniProt:M1B681	HAMAP:MF_00384	PFAM:PF00060	PFAM:PF00288	PFAM:PF00497
PFAM:PF01094	PFAM:PF08544	EnsemblPlantsGene:PGSC0003DMG400014663	PGSC:PGSC0003DMG400014663	EnsemblPlants:PGSC0003DMT400038012	PRINTS:PR00958
ScanProsite:PS00627	PANTHER:PTHR43891	PANTHER:PTHR43891:SF18	InterPro:Peripla_BP_I	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00062	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850	SUPFAM:SSF54211	SUPFAM:SSF55060
SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TIGRFAMs:TIGR00191	TMHMM:TMhelix	UniParc:UPI000294FEC7	SEG:seg

Description

Glutamate receptor 3 plant [Source:PGSC_GENE;Acc:PGSC0003DMG400014663]

Coordinates

chr1:+:88379429..88385233

Molecular Weight (calculated)

133693.0 Da

IEP (calculated)

8.916

GRAVY (calculated)

0.125

Length

1228 amino acids

Sequence
(BLAST)

0001: MNLKWFVFVF LCFIEQSSEE TDEVKIGAIF SFGTTNGKVA KIAMEAAVQD VNSDPSLLGG RKLALTLHDS NYSGFLGIIG AVIGPQSSVI AHVLSHLVNQ
0101: LHVPLLSFTA LDPTLSPLQY PYFIQTAPND LFLMTAVADM ISYFQYREVV AIFSDDDQGK NSITALGDKL AERRCKISYK AILPPQPISS RDLIVDQLVK
0201: VTSMESRVIV LHTLSITGLK VFEIAHDLGM MTSEYVWIAT SWLSSTLDST SVSPKVATSI QGALTLRSHT PDSSKKRAFY SRWNKLSNGS IALNVYGLYA
0301: YDTVWMIAHA LKEFFDHGGK ITYSNDSNLN SFAGKAMNLA ALSIFDGGNQ LLSNILKTNM TGVSGPIAFN PDRSMPRPSF DVLNVAGKGL MRQIGYWCNY
0401: SGLSVVPPES LYAKPANRSS STQLLDQVIW PGKTTKRPRG WIFPDNGRPL RIGVPRRVSY KAFVSEEEGS GVVRGYSIDV FLAALKCLPY PVPHKFIMFG
0501: DGHKNPSYSQ LVNMITANVF DAAVGDITIV TNRTKILDFS QPYADSGLVV VVHVKKIRSI AWAFLRPFTP LTWGVIAVFC LVVGTVVWTL EHKFNDEFRG
0601: PPKKQMVTIL WFSFSTIFGA PRENTVSTLG RIVLLIWLFV ILIITSSYTA SLTSFLTVQQ LSSSIQGIES LVTSNDAIGY QVGSFAENYL FEEVNIAKSR
0701: LVPLGSPEEY ADALEQGRVA AVVDERPYVD LFLSTYCGFQ KVGPEFTKSG WGFAFPRDSP LAIDMSTAIL QLSENGELEK IHKKWLNRKV CGGQSSAADS
0801: EQLPLKSFWG LFLISGVTCC FALLVYFCLM LHQFKQHFPE LTHGSTSRTR ISHSSGINKI VVAMAVLCQS PLNLKLITSS SSSSRNRTAN PSFRLNLSAH
0901: SRSEPSPVFT SVKSFAPATV ANLGPGFDFL GCAVDGIGDF VTLRLDPNVH PGEVSISDIS GAGKKLRRNP RWNCAGIAAI SVMKMLNIRS VGLTLSLHKG
1001: LPLGSGLGSS AASAAAAAVA GKRLFGRPLT LTDLVLAGLD SESKVSGYHA DNVAPAIMGG FVLIRSYHPL ELIQLNFPHE KDLFFVLANP EFEAPTKKMR
1101: EALPQEITMS HHIWNCSQAG ALVASVLLGD VSGFGKALSS DKIVEPRRTP LIPGMEGVKK AAMEAGAFGC TISGAGPTAV AVTDNEETGR EIGQRMVEAF
1201: LEHGKLKALA MVKKLDRIGA RLVSSQPI

Best Arabidopsis Sequence Match ( AT4G35290.4 )
(BLAST)

001: MFWVLVLLSF IVLIGDGMIS EGAGLRPRYV DVGAIFSLGT LQGEVTNIAM KAAEEDVNSD PSFLGGSKLR ITTYDAKRNG FLTIMGALQF METDAVAIIG
101: PQTSIMAHVL SHLANELSVP MLSFTALDPS LSALQFPFFV QTAPSDLFLM RAIAEMISYY GWSEVIALYN DDDNSRNGIT ALGDELEGRR CKISYKAVLP
201: LDVVITSPRE IINELVKIQG MESRVIIVNT FPKTGKKIFE EAQKLGMMEK GYVWIATTWL TSLLDSVNPL PAKTAESLRG VLTLRIHTPN SKKKKDFVAR
301: WNKLSNGTVG LNVYGLYAYD TVWIIARAVK RLLDSRANIS FSSDPKLTSM KGGGSLNLGA LSIFDQGSQF LDYIVNTNMT GVTGQIQFLP DRSMIQPSYD
401: IINVVDDGFR QIGYWSNHSG LSIIPPESLY KKLSNRSSSN QHLNNVTWPG GTSETPRGWV FPNNGRRLRI GVPDRASFKE FVSRLDGSNK VQGYAIDVFE
501: AAVKLISYPV PHEFVLFGDG LKNPNFNEFV NNVTIGVFDA VVGDIAIVTK RTRIVDFTQP YIESGLVVVA PVTKLNDTPW AFLRPFTPPM WAVTAAFFLI
601: VGSVIWILEH RINDEFRGPP RKQIVTILWF SFSTMFFSHR ENTVSTLGRA VLLIWLFVVL IITSSYTASL TSILTVQQLN SPIRGVDTLI SSSGRVGFQV
701: GSYAENYMID ELNIARSRLV PLGSPKEYAA ALQNGTVAAI VDERPYVDLF LSEFCGFAIR GQEFTRSGWG FAFPRDSPLA IDMSTAILGL SETGQLQKIH
801: DKWLSRSNCS NLNGSVSDED SEQLKLRSFW GLFLVCGISC FIALFIYFFK IVRDFFRHGK YDEEATVPSP ESSRSKSLQT FLAYFDEKED ESKRRMKRKR
901: NDDLSLKPSR PI

Arabidopsis Description

GLR3.2Glutamate receptor 3.2 [Source:UniProtKB/Swiss-Prot;Acc:Q93YT1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.