Factsheet for TraesCSU01G108000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G065700.1	Wheat	plasma membrane	96.1	96.21
TraesCS6A01G049000.1	Wheat	plasma membrane	95.24	94.52
HORVU0Hr1G018770.1	Barley	plasma membrane	80.95	93.15
TraesCSU01G107900.1	Wheat	plasma membrane	92.86	92.66
TraesCSU01G107700.2	Wheat	plasma membrane	87.45	87.26
TraesCSU01G108800.1	Wheat	plasma membrane	85.71	85.81
KXG29299	Sorghum	plasma membrane	79.87	79.7
Zm00001d015007_P003	Maize	plasma membrane	76.52	78.47
Os02t0117500-01	Rice	plasma membrane	80.09	78.39
Zm00001d033769_P001	Maize	golgi, plasma membrane	53.25	77.97
Zm00001d054016_P004	Maize	plasma membrane	79.11	76.87
OQU84212	Sorghum	mitochondrion	71.1	72.28
GSMUA_Achr9P23900_001	Banana	plasma membrane	58.44	58.82
GSMUA_Achr3P27050_001	Banana	plasma membrane	57.68	58.25
VIT_18s0122g00990.t01	Wine grape	plasma membrane	55.09	54.5
Solyc04g082610.2.1	Tomato	plasma membrane	53.9	53.66
KRH60898	Soybean	plasma membrane	53.46	53.41
VIT_03s0038g03920.t01	Wine grape	plasma membrane	52.92	53.33
KRH51581	Soybean	plasma membrane	53.57	53.28
CDY71348	Canola	golgi, plasma membrane	15.26	53.21
CDY35797	Canola	plasma membrane	47.29	53.16
VIT_07s0031g02170.t01	Wine grape	plasma membrane	53.57	52.88
PGSC0003DMT400025675	Potato	plasma membrane	53.25	52.85
KRH39417	Soybean	golgi, plasma membrane, plastid	52.49	52.15
Bra034931.1-P	Field mustard	plasma membrane	52.27	51.99
AT1G42540.2	Thale cress	plasma membrane	52.27	51.77
KRH39414	Soybean	plasma membrane	51.95	50.96
CDY70557	Canola	extracellular, plasma membrane	29.22	50.66
CDY68928	Canola	extracellular, plasma membrane	29.11	50.47
CDX76331	Canola	plasma membrane	49.68	50.44
KRH07800	Soybean	plasma membrane	49.89	50.33
KRH14012	Soybean	plasma membrane	49.78	50.27
CDX73718	Canola	plasma membrane	48.38	50.17
AT4G35290.2	Thale cress	plasma membrane	49.46	50.11
CDX69127	Canola	plasma membrane	49.46	50.11
Bra011603.1-P	Field mustard	plasma membrane	49.24	49.84
CDY65624	Canola	plasma membrane	46.75	49.66
Solyc02g082480.2.1	Tomato	plasma membrane	51.41	49.58
CDY52597	Canola	plasma membrane	48.92	49.56
CDY24327	Canola	plasma membrane	48.7	49.34
Bra036795.1-P	Field mustard	plasma membrane	47.51	49.27
CDX78008	Canola	plasma membrane	47.51	49.27
KRH39412	Soybean	plasma membrane	50.43	49.21
KRH28939	Soybean	plasma membrane	49.89	49.15
KRH76527	Soybean	plasma membrane	49.89	49.15
CDX80728	Canola	cytosol	12.77	48.76
AT2G17260.1	Thale cress	plasma membrane	48.81	48.76
AT3G51480.1	Thale cress	plasma membrane	47.19	48.28
CDX75491	Canola	cytosol, plasma membrane, plastid	10.5	47.55
CDX95758	Canola	cytosol	20.35	46.19
CDX75490	Canola	extracellular, plasma membrane, vacuole	27.71	43.99
KRH74102	Soybean	cytosol, nucleus, peroxisome	29.98	42.68
Bra020812.1-P	Field mustard	plasma membrane	41.99	38.26
PGSC0003DMT400038012	Potato	plasma membrane	47.29	35.59
Os02t0117600-01	Rice	plastid	0.32	1.24

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	InterPro:ANF_lig-bd_rcpt	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln
PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090	PRINTS:PR01176	PANTHER:PTHR43891
PANTHER:PTHR43891:SF4	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850	SignalP:SignalP-noTM
InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	EnsemblPlantsGene:TraesCSU01G108000	EnsemblPlants:TraesCSU01G108000.1	TIGR:cd06366	TIGR:cd13686
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:94220971..94224774

Molecular Weight (calculated)

102186.0 Da

IEP (calculated)

6.023

GRAVY (calculated)

0.158

Length

924 amino acids

Sequence
(BLAST)

001: MEIVFLMLLV LSLLLFPNGI CKSLATGPPV VNIGSILQFD STTGGVAAVA IHTALEDINS DPTVLNGTTL KVQMKDTNCF DGFLGMVQAL QFMETDVIAL
101: IGPQCSTISH MISYVANELQ VPLMSFASDA TLSSIQFPFF VRTGPSDLYQ MAAVAEVVDY NHWKIVTAIY IDNVYGRNGI AALDDALTLK RCKISYKVGF
201: PSNAKRSDLI NLLVSVSYME PRVIVLHTGA EPGLKLFSVA NQLNMMGNGY VWIATDWLSA YLDANSSVPA ETISGLQGVL TLRPHIPNSK MKSNLVSKWG
301: TQSKKYNYSD LRVNTYGFYV YDSVWAVARA LDAFFDDGGR ISFSNDLHDG IGGTLHLEAM SIFDMGSKLL EKIRKVNFSG ISGQVQFDAV GNLIHPAYDI
401: INVIGNGMRT IGFWSNYSGL LSTVSPEALY SKPPNISLAD QHLYDVIWPG ETAQRPRGWV FPSNAKQLKI GVPNRFSFKE IVTVDNATGS MKGYCIDVFT
501: QALALLPYPV SYKFVPFGNG TENPNYDKLV QMIESNEFDA AIGDIAITMR RTVTFDFTQP FIETGLVILA PVKEHITSSW AFLQPFSLEM WCVTGLFFLI
601: VGVVIWVLEH RINDDFRGSV CQQIITIFSF SFSTLFFAHR ENTMSALGRG VLIIWLFVVL IIVSSYTASL TSILTVQQLD TSIKGIDDLK NSNDPIGFQV
701: GSFAQDYMVK ELNISRSRLR ALGSPQEYAE ALKIGPKEGG VMAIVDERPY VELFLSTYCK IAVAGTDFTS RGWGFAFPRD SPLQVDLSTA ILSLSENGEL
801: QRIHSKWLNT GECTTDNSEF VDSNQLRLES FLGLFLICGV ACVLALLLYF GIMLCKYLRH EPRKSLRRFI SFVHGKEPPK NMERRSMSLP GSSTPTTPMG
901: SFSSLDMERP ARPVRNGSVI DMES

Best Arabidopsis Sequence Match ( AT1G42540.1 )
(BLAST)

001: MKQLWTFFFL SFLCSGLFRR THSEKPKVVK IGSIFSFDSV IGKVAKIAID EAVKDVNSNP DILSGTKFSV SMQNSNCSGF MGMVEALRFM EKDIVGIIGP
101: QCSVVAHMIS HMANELRVPL LSFAVTDPVM SPLQFPYFIR TTQSDLYQMD AIASIVDFYG WKEVIAVFVD DDFGRNGVAA LNDKLASRRL RITYKAGLHP
201: DTAVNKNEIM NMLIKIMLLQ PRIVVIHVYS ELGFAVFKEA KYLGMMGNGY VWIATDWLST NLDSSSPLPA ERLETIQGVL VLRPHTPDSD FKREFFKRWR
301: KMSGASLALN TYGLYAYDSV MLLARGLDKF FKDGGNISFS NHSMLNTLGK SGNLNLEAMT VFDGGEALLK DILGTRMVGL TGQLQFTPDR SRTRPAYDII
401: NVAGTGVRQI GYWSNHSGLS TVLPELLYTK EKPNMSTSPK LKHVIWPGET FTKPRGWVFS NNGKELKIGV PLRVSYKEFV SQIRGTENMF KGFCIDVFTA
501: AVNLLPYAVP VKFIPYGNGK ENPSYTHMVE MITTGNFDGV VGDVAIVTNR TKIVDFTQPY AASGLVVVAP FKKLNSGAWA FLRPFNRLMW AVTGCCFLFV
601: GIVVWILEHR TNDEFRGPPK RQCVTILWFS FSTMFFAHRE NTVSTLGRLV LIIWLFVVLI INSSYTASLT SILTVQQLSS PIKGIESLRE RDDPIGYQVG
701: SFAESYLRNE LNISESRLVP LGTPEAYAKA LKDGPSKGGV AAIVDERPYV ELFLSSNCAY RIVGQEFTKS GWGFAFPRDS PLAIDLSTAI LELAENGDLQ
801: RIHDKWLMKN ACTLENAELE SDRLHLKSFW GLFLICGVAC LLALFLYFVQ IIRQLYKKPT DDAIARDQQQ NHDSSSMRST RLQRFLSLMD EKEESKHESK
901: KRKIDGSMND TSGSTRSRGF DRERSFNSVN PLD

Arabidopsis Description

GLR3.3Glutamate receptor 3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.