Factsheet for AT1G42540.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

endoplasmic reticulum 3
golgi 4
extracellular 3
mitochondrion 2
plasma membrane 5
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35797	Canola	plasma membrane	80.06	90.88
Bra034931.1-P	Field mustard	plasma membrane	89.5	89.88
CDY70557	Canola	extracellular, plasma membrane	50.59	88.56
CDY68928	Canola	extracellular, plasma membrane	50.59	88.56
CDX80728	Canola	cytosol	22.94	88.43
Solyc04g082610.2.1	Tomato	plasma membrane	65.38	65.73
PGSC0003DMT400025675	Potato	plasma membrane	65.49	65.63
VIT_18s0122g00990.t01	Wine grape	plasma membrane	63.99	63.92
KRH60898	Soybean	plasma membrane	62.92	63.46
KRH51581	Soybean	plasma membrane	62.17	62.43
GSMUA_Achr9P23900_001	Banana	plasma membrane	58.84	59.8
GSMUA_Achr5P19180_001	Banana	plasma membrane	57.66	59.78
GSMUA_Achr3P27050_001	Banana	plasma membrane	57.88	59.02
AT3G51480.1	Thale cress	plasma membrane	54.02	55.81
TraesCS2A01G455200.2	Wheat	plasma membrane	53.91	54.73
TraesCS2D01G455600.2	Wheat	plasma membrane	53.48	54.3
TraesCS2B01G477300.4	Wheat	plasma membrane	53.38	54.19
Zm00001d015007_P003	Maize	plasma membrane	52.09	53.94
Zm00001d002532_P003	Maize	plasma membrane	53.7	53.81
KXG26996	Sorghum	plasma membrane	53.7	53.58
AT2G17260.1	Thale cress	plasma membrane	53.05	53.51
AT4G35290.2	Thale cress	plasma membrane	52.3	53.51
HORVU2Hr1G104920.3	Barley	plasma membrane	54.45	53.47
KXG29299	Sorghum	plasma membrane	52.52	52.92
TraesCS6B01G066200.1	Wheat	plasma membrane	52.09	52.77
TraesCSU01G108800.1	Wheat	plasma membrane	52.2	52.76
TraesCS6A01G049900.1	Wheat	plasma membrane	51.77	52.33
HORVU0Hr1G018770.1	Barley	plasma membrane	45.02	52.3
TraesCSU01G108000.1	Wheat	plasma membrane	51.77	52.27
TraesCS6A01G048700.1	Wheat	plasma membrane	51.77	52.16
TraesCSU01G107900.1	Wheat	plasma membrane	51.77	52.16
TraesCS6A01G048800.1	Wheat	plasma membrane	51.66	52.05
TraesCS6B01G065700.1	Wheat	plasma membrane	51.45	52.0
TraesCS6B01G065500.1	Wheat	plasma membrane	51.55	51.94
HORVU2Hr1G049510.4	Barley	plasma membrane	51.77	51.77
HORVU0Hr1G036590.3	Barley	plasma membrane	51.77	51.77
TraesCS6A01G049000.1	Wheat	plasma membrane	51.55	51.66
TraesCS6B01G065400.1	Wheat	plasma membrane	51.23	51.62
Os02t0117500-01	Rice	plasma membrane	52.2	51.59
HORVU6Hr1G009520.1	Barley	plasma membrane	51.02	51.4
TraesCSU01G107700.2	Wheat	plasma membrane	51.02	51.4
OQU84212	Sorghum	mitochondrion	49.62	50.94
Zm00001d054016_P004	Maize	plasma membrane	51.66	50.68
Zm00001d033769_P001	Maize	golgi, plasma membrane	33.23	49.13
AT1G05200.1	Thale cress	plasma membrane	50.38	49.01
Os04t0585200-02	Rice	extracellular	27.87	48.15
AT2G32390.5	Thale cress	plasma membrane	49.09	48.06
AT2G32400.1	Thale cress	plasma membrane	42.44	43.0
AT2G24720.1	Thale cress	plasma membrane	31.83	32.28
AT2G29100.2	Thale cress	plasma membrane	32.05	31.74
AT2G29120.1	Thale cress	plasma membrane	32.05	31.41
AT2G29110.2	Thale cress	plasma membrane	31.51	31.01
AT5G27100.1	Thale cress	plasma membrane	29.8	30.85
AT2G24710.3	Thale cress	plasma membrane	30.12	30.58
AT4G31710.2	Thale cress	plasma membrane	29.69	30.37
AT5G11210.5	Thale cress	plasma membrane	29.05	29.52
AT5G11180.2	Thale cress	plasma membrane	30.01	28.96
AT5G48410.1	Thale cress	plasma membrane	24.44	26.51
Os02t0117600-01	Rice	plastid	0.21	0.83

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	EntrezGene:840859	ProteinID:AAG51316.1
ProteinID:AEE31925.1	InterPro:ANF_lig-bd_rcpt	ProteinID:ANM59840.1	ProteinID:ANM59841.1	ArrayExpress:AT1G42540	EnsemblPlantsGene:AT1G42540
RefSeq:AT1G42540	TAIR:AT1G42540	RefSeq:AT1G42540-TAIR-G	EnsemblPlants:AT1G42540.2	Symbol:ATGLR3.3	Unigene:At.39090
GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005262	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0006811	GO:GO:0006816
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007267	GO:GO:0008066	GO:GO:0008150
GO:GO:0009605	GO:GO:0009606	GO:GO:0009607	GO:GO:0009611	GO:GO:0009628	GO:GO:0009630
GO:GO:0009719	GO:GO:0009864	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019722
GO:GO:0035235	GO:GO:0038023	GO:GO:0045087	GO:GO:0050832	GO:GO:0070588	GO:GO:0071230
InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	RefSeq:NP_001322169.1	RefSeq:NP_001322170.1	RefSeq:NP_174978.1	PFAM:PF00060
PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090	PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF8
InterPro:Peripla_BP_I	UniProt:Q9C8E7	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850	SignalP:SignalP-noTM
InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI00000A219E	SEG:seg	:	:

Description

GLR3.3Glutamate receptor 3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E7]

Coordinates

chr1:+:15973054..15976773

Molecular Weight (calculated)

104695.0 Da

IEP (calculated)

9.020

GRAVY (calculated)

-0.037

Length

933 amino acids

Sequence
(BLAST)

001: MKQLWTFFFL SFLCSGLFRR THSEKPKVVK IGSIFSFDSV IGKVAKIAID EAVKDVNSNP DILSGTKFSV SMQNSNCSGF MGMVEALRFM EKDIVGIIGP
101: QCSVVAHMIS HMANELRVPL LSFAVTDPVM SPLQFPYFIR TTQSDLYQMD AIASIVDFYG WKEVIAVFVD DDFGRNGVAA LNDKLASRRL RITYKAGLHP
201: DTAVNKNEIM NMLIKIMLLQ PRIVVIHVYS ELGFAVFKEA KYLGMMGNGY VWIATDWLST NLDSSSPLPA ERLETIQGVL VLRPHTPDSD FKREFFKRWR
301: KMSGASLALN TYGLYAYDSV MLLARGLDKF FKDGGNISFS NHSMLNTLGK SGNLNLEAMT VFDGGEALLK DILGTRMVGL TGQLQFTPDR SRTRPAYDII
401: NVAGTGVRQI GYWSNHSGLS TVLPELLYTK EKPNMSTSPK LKHVIWPGET FTKPRGWVFS NNGKELKIGV PLRVSYKEFV SQIRGTENMF KGFCIDVFTA
501: AVNLLPYAVP VKFIPYGNGK ENPSYTHMVE MITTGNFDGV VGDVAIVTNR TKIVDFTQPY AASGLVVVAP FKKLNSGAWA FLRPFNRLMW AVTGCCFLFV
601: GIVVWILEHR TNDEFRGPPK RQCVTILWFS FSTMFFAHRE NTVSTLGRLV LIIWLFVVLI INSSYTASLT SILTVQQLSS PIKGIESLRE RDDPIGYQVG
701: SFAESYLRNE LNISESRLVP LGTPEAYAKA LKDGPSKGGV AAIVDERPYV ELFLSSNCAY RIVGQEFTKS GWGFAFPRDS PLAIDLSTAI LELAENGDLQ
801: RIHDKWLMKN ACTLENAELE SDRLHLKSFW GLFLICGVAC LLALFLYFVQ IIRQLYKKPT DDAIARDQQQ NHDSSSMRST RLQRFLSLMD EKEESKHESK
901: KRKIDGSMND TSGSTRSRGF DRERSFNSVN PLD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.