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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 7
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d002532_P003 Maize plasma membrane 89.2 89.58
TraesCS2A01G455200.2 Wheat plasma membrane 71.12 72.36
TraesCS2B01G477300.4 Wheat plasma membrane 71.12 72.36
TraesCS2D01G455600.2 Wheat plasma membrane 70.7 71.93
HORVU2Hr1G104920.3 Barley plasma membrane 71.76 70.63
Os04t0585200-02 Rice extracellular 40.64 70.37
GSMUA_Achr5P19180_001 Banana plasma membrane 59.47 61.78
KXG29299 Sorghum plasma membrane 56.26 56.8
VIT_18s0122g00990.t01 Wine grape plasma membrane 56.36 56.42
KRH60898 Soybean plasma membrane 55.62 56.22
KRH51581 Soybean plasma membrane 55.72 56.08
PGSC0003DMT400025675 Potato plasma membrane 55.83 56.07
Solyc04g082610.2.1 Tomato plasma membrane 55.4 55.82
VIT_07s0031g02170.t01 Wine grape plasma membrane 54.97 54.91
OQU84212 Sorghum mitochondrion 52.83 54.35
VIT_03s0038g03920.t01 Wine grape plasma membrane 52.83 53.87
AT1G42540.2 Thale cress plasma membrane 53.58 53.7
CDY35797 Canola plasma membrane 47.06 53.53
KRH07800 Soybean plasma membrane 51.87 52.95
KRH14012 Soybean plasma membrane 51.55 52.68
Bra034931.1-P Field mustard plasma membrane 52.3 52.64
EER97313 Sorghum plasma membrane 51.34 51.95
KRH28939 Soybean plasma membrane 51.76 51.6
KRH39412 Soybean plasma membrane 52.19 51.53
Solyc02g082480.2.1 Tomato plasma membrane 52.73 51.46
KRH39417 Soybean golgi, plasma membrane, plastid 51.12 51.4
CDX73718 Canola plasma membrane 48.77 51.18
KRH76527 Soybean plasma membrane 51.34 51.17
CDY70557 Canola extracellular, plasma membrane 29.09 51.03
CDY68928 Canola extracellular, plasma membrane 29.09 51.03
CDX76331 Canola plasma membrane 49.63 50.99
CDX69127 Canola plasma membrane 49.63 50.88
Bra036795.1-P Field mustard plasma membrane 48.45 50.84
CDX78008 Canola plasma membrane 48.45 50.84
Bra011603.1-P Field mustard plasma membrane 49.52 50.71
KRH39414 Soybean plasma membrane 51.02 50.64
AT3G51480.1 Thale cress plasma membrane 48.88 50.61
CDY52597 Canola plasma membrane 49.3 50.55
AT4G35290.2 Thale cress plasma membrane 49.3 50.55
CDY24327 Canola plasma membrane 49.2 50.44
CDX95758 Canola cytosol 21.93 50.37
CDY65624 Canola plasma membrane 46.84 50.34
EER90229 Sorghum plasma membrane 49.84 50.32
AT2G17260.1 Thale cress plasma membrane 49.73 50.27
CDY71348 Canola golgi, plasma membrane 14.22 50.19
EER95720 Sorghum plastid 51.66 49.64
KXG20640 Sorghum plasma membrane 48.88 49.14
KXG20638 Sorghum plasma membrane 50.37 49.06
CDX80728 Canola cytosol 12.19 47.11
EER95721 Sorghum plastid 48.77 46.48
KRH74102 Soybean cytosol, nucleus, peroxisome 31.76 45.76
CDX75491 Canola cytosol, plasma membrane, plastid 9.73 44.61
CDX75490 Canola extracellular, plasma membrane, vacuole 27.59 44.33
Bra020812.1-P Field mustard plasma membrane 41.93 38.66
PGSC0003DMT400038012 Potato plasma membrane 48.13 36.65
KXG19504 Sorghum golgi, plasma membrane, vacuole 29.63 31.8
KXG31244 Sorghum mitochondrion 32.94 30.43
OQU89536 Sorghum cytosol 29.09 30.09
OQU84757 Sorghum plasma membrane 29.09 29.86
OQU89534 Sorghum plasma membrane 28.77 29.53
KXG35671 Sorghum plasma membrane 30.7 29.29
KXG35672 Sorghum mitochondrion, plasma membrane 30.27 29.18
EER98936 Sorghum plasma membrane 29.3 28.96
EER98937 Sorghum plasma membrane 29.2 28.89
OQU89527 Sorghum plasma membrane 28.02 28.17
KXG35670 Sorghum plasma membrane 27.81 26.61
Protein Annotations
Gene3D:1.10.287.70MapMan:24.3.9Gene3D:3.40.190.10Gene3D:3.40.50.2300UniProt:A0A1B6PMU7InterPro:ANF_lig-bd_rcpt
GO:GO:0003674GO:GO:0004871GO:GO:0004970GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006811GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0035235GO:GO:0038023InterPro:Iontro_rcptInterPro:Iontropic_Glu_rcpt_plnProteinID:KXG26995.1
EnsemblPlants:KXG26996ProteinID:KXG26996ProteinID:KXG26996.1PFAM:PF00060PFAM:PF00497PFAM:PF01094
PIRSF:PIRSF037090PANTHER:PTHR43891PANTHER:PTHR43891:SF13InterPro:Peripla_BP_ISMART:SM00079EnsemblPlantsGene:SORBI_3006G193200
SUPFAM:SSF53822SUPFAM:SSF53850SignalP:SignalP-noTMInterPro:Solute-binding_3/MltF_NTMHMM:TMhelixUniParc:UPI00081ACA49
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr6:-:54672671..54678483
Molecular Weight (calculated)
101834.0 Da
IEP (calculated)
7.081
GRAVY (calculated)
0.142
Length
935 amino acids
Sequence
(BLAST)
001: MKFMLHILSI FCCLCSCALG QNISVRPSVV NIGALFTFSS TNGRAAKVAI AAAVNDINKD PSVLRGTKLV VQMQDTNYSG FIGIVQALQF MEKDTIAIIG
101: PQSSVVAHVI SHVANELQVP LMSFAATDPT LTPLQYPFFV RTVHSDQFQM ASVASLIDYY GWKMVTAVYI DDDYGRNGIS SLDDELAKRR LKILYKAAIR
201: PGAKKSEMAA VLVKAAMMES RVFVLHAHDD SGIDVFSLAY NLSMTSGGYV WIATDWLTAY LDSAPRLESG LLSTMQGVLT LRQHTENTDR KKTLVSQWSK
301: LVKEDSGSSG SLPNSYGLYA YDTVWMLAHG LDAFFNSGGN ISFSPDPRLR AVAGGALNLD ALSVFDEGML LLEKIRKVNF MGATGTVKLD SDGNLILPAY
401: DIVNIIGSGL RTIGYWSNYS GLSIVSPETL YKKPFNVSAN QELHSAIWPG ETVTKPRGWV FPNNGNELRI GVPDRVSYRQ FVSVDNQTET VGGFCIDVFA
501: AAINLLQYPV TYRFIPFGNG RENPSYTELI SQIVTNGFDA VVGDVAIVTN RTKVVDFTQP YVGSGLVILT AVKTQSSNGW AFLQPFTIRM WSVTGVFFLI
601: IGTVIWLLEH RINDEFRGPP AKQVITVFWF SFSTLFFAHR EDTRSTLGRF VILIWLFVVL IIQSSYTASL TSILTVQQLT SPITGIDNLI ASDEPIGFQV
701: GSFAESYLVH ELGVSPSRLK ALGTPDEYKQ ALDLGPRKGG VVAIVDERPY VELFLLQHDK VAIVGAEFTK SGWGFAFPRD SQLAVDMSTA ILSLSENGDL
801: QRIHDKWLSN GASQSTADLE PAERLRVQSF SALFLICGVA CLAALAIHGC ILVRQYSLHV ASLPPPAAVA TGGDGAISRS RRSSIRAFLS FADRRETQSS
901: LKGSCKDPAA LGGSSGSSSN GVSSFTSSNN TSMSR
Best Arabidopsis Sequence Match ( AT1G42540.2 )
(BLAST)
001: MKQLWTFFFL SFLCSGLFRR THSEKPKVVK IGSIFSFDSV IGKVAKIAID EAVKDVNSNP DILSGTKFSV SMQNSNCSGF MGMVEALRFM EKDIVGIIGP
101: QCSVVAHMIS HMANELRVPL LSFAVTDPVM SPLQFPYFIR TTQSDLYQMD AIASIVDFYG WKEVIAVFVD DDFGRNGVAA LNDKLASRRL RITYKAGLHP
201: DTAVNKNEIM NMLIKIMLLQ PRIVVIHVYS ELGFAVFKEA KYLGMMGNGY VWIATDWLST NLDSSSPLPA ERLETIQGVL VLRPHTPDSD FKREFFKRWR
301: KMSGASLALN TYGLYAYDSV MLLARGLDKF FKDGGNISFS NHSMLNTLGK SGNLNLEAMT VFDGGEALLK DILGTRMVGL TGQLQFTPDR SRTRPAYDII
401: NVAGTGVRQI GYWSNHSGLS TVLPELLYTK EKPNMSTSPK LKHVIWPGET FTKPRGWVFS NNGKELKIGV PLRVSYKEFV SQIRGTENMF KGFCIDVFTA
501: AVNLLPYAVP VKFIPYGNGK ENPSYTHMVE MITTGNFDGV VGDVAIVTNR TKIVDFTQPY AASGLVVVAP FKKLNSGAWA FLRPFNRLMW AVTGCCFLFV
601: GIVVWILEHR TNDEFRGPPK RQCVTILWFS FSTMFFAHRE NTVSTLGRLV LIIWLFVVLI INSSYTASLT SILTVQQLSS PIKGIESLRE RDDPIGYQVG
701: SFAESYLRNE LNISESRLVP LGTPEAYAKA LKDGPSKGGV AAIVDERPYV ELFLSSNCAY RIVGQEFTKS GWGFAFPRDS PLAIDLSTAI LELAENGDLQ
801: RIHDKWLMKN ACTLENAELE SDRLHLKSFW GLFLICGVAC LLALFLYFVQ IIRQLYKKPT DDAIARDQQQ NHDSSSMRST RLQRFLSLMD EKEESKHESK
901: KRKIDGSMND TSGSTRSRGF DRERSFNSVN PLD
Arabidopsis Description
GLR3.3Glutamate receptor 3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.