CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90229
EER95720
EER95721
EER97313
KXG20638
KXG20640

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	EER90229	AT1G05200.1	23590882
AT1G05200.1	EER95720	AT1G05200.1	23590882
AT1G05200.1	EER95721	AT1G05200.1	23590882
AT1G05200.1	EER97313	AT1G05200.1	23590882
AT1G05200.1	KXG20638	AT1G05200.1	23590882
AT1G05200.1	KXG20640	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006508_P003	Maize	plasma membrane	93.07	93.17
TraesCS2D01G226400.1	Wheat	plasma membrane	80.84	80.67
HORVU2Hr1G045730.6	Barley	plasma membrane	80.84	80.67
TraesCS2B01G246200.1	Wheat	plasma membrane	78.03	80.47
TraesCS2A01G220700.1	Wheat	plasma membrane	80.3	79.96
GSMUA_Achr9P11690_001	Banana	plasma membrane	63.64	65.85
GSMUA_Achr9P02750_001	Banana	plasma membrane	63.74	64.23
GSMUA_Achr6P00460_001	Banana	plasma membrane	61.58	61.51
VIT_12s0059g02270.t01	Wine grape	plasma membrane	59.31	59.31
Solyc05g045650.2.1	Tomato	plasma membrane	56.17	59.18
EER90229	Sorghum	plasma membrane	57.14	57.02
PGSC0003DMT400013497	Potato	plasma membrane	58.33	56.8
Solyc07g052400.2.1	Tomato	cytosol	49.78	56.72
CDY06165	Canola	plasma membrane	53.46	56.72
KRH25388	Soybean	plasma membrane	56.49	56.49
KRH56121	Soybean	plasma membrane	56.71	56.4
KRH22559	Soybean	plasma membrane	57.36	55.97
KRH26793	Soybean	plasma membrane	57.36	55.97
KXG20638	Sorghum	plasma membrane	57.9	55.73
PGSC0003DMT400065539	Potato	plasma membrane	56.49	55.47
KXG20640	Sorghum	plasma membrane	55.52	55.16
CDY10044	Canola	plasma membrane	55.95	55.06
EER95720	Sorghum	plastid	57.58	54.68
Bra015398.1-P	Field mustard	plasma membrane	55.52	53.94
AT1G05200.1	Thale cress	plasma membrane	55.84	53.81
CDY49512	Canola	plasma membrane	55.41	53.73
CDY46839	Canola	plasma membrane	55.19	53.63
Bra032480.1-P	Field mustard	plasma membrane	55.41	53.28
AT2G32390.5	Thale cress	plasma membrane	53.35	51.73
KXG26996	Sorghum	plasma membrane	51.95	51.34
Bra005589.1-P	Field mustard	plasma membrane	52.27	51.11
KXG29299	Sorghum	plasma membrane	50.43	50.32
EER95721	Sorghum	plastid	51.84	48.83
OQU84212	Sorghum	mitochondrion	47.51	48.29
CDY48271	Canola	plastid	37.88	47.36
CDY66698	Canola	plasma membrane	45.02	46.79
CDX84735	Canola	plasma membrane	44.48	46.28
CDY12211	Canola	plasma membrane	41.23	42.86
EER98937	Sorghum	plasma membrane	31.71	31.01
OQU84757	Sorghum	plasma membrane	30.52	30.95
KXG19504	Sorghum	golgi, plasma membrane, vacuole	28.57	30.31
KXG35672	Sorghum	mitochondrion, plasma membrane	31.28	29.79
OQU89536	Sorghum	cytosol	29.11	29.76
KXG35671	Sorghum	plasma membrane	31.49	29.69
KXG31244	Sorghum	mitochondrion	32.36	29.55
OQU89534	Sorghum	plasma membrane	29.11	29.53
OQU89527	Sorghum	plasma membrane	29.44	29.25
EER98936	Sorghum	plasma membrane	29.76	29.07
KXG35670	Sorghum	plasma membrane	28.9	27.33

Protein Annotations

Gene3D:1.10.287.70	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	EntrezGene:8080138	InterPro:ANF_lig-bd_rcpt
UniProt:C5XA39	ncoils:Coil	EnsemblPlants:EER97313	ProteinID:EER97313	ProteinID:EER97313.1	GO:GO:0003674
GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln	PFAM:PF00060	PFAM:PF00497
PFAM:PF01094	PIRSF:PIRSF037090	PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I
SMART:SM00079	EnsemblPlantsGene:SORBI_3002G321400	SUPFAM:SSF53822	SUPFAM:SSF53850	unigene:Sbi.20649	SignalP:SignalP-noTM
InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI0001A835B7	RefSeq:XP_002460792.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:69307142..69312470

Molecular Weight (calculated)

101032.0 Da

IEP (calculated)

6.148

GRAVY (calculated)

0.143

Length

924 amino acids

Sequence
(BLAST)

001: MGSAHLAALL LCGCMFVTGT VAASQNGNLT RPAEVRIGAL FTFDSVIGKA VRPAIELAVA DVNADPSILW GTNLSVLMQD TNCSGFVGTI EALQLLAKDV
101: VAVLGPQSSA VAHVISHAVN ELHVPLISFA ATDPALSSLE YPYFVRATHS DYYQMGAIAA IISQYQWKQV IAIYVDDDYG RGGISVLGDA LAKRKCKISY
201: KAKLPPGAAK TSIKDILMQV NDMESRVYVI HVNPDSGLNV FLAAKSLGMM SSGYVWIATD WLSAVIDSSE HGNPDVMELT QGVLVLRQHI ADSDIQHASK
301: WNNLTRNGSS YFMHAYDSVW LVAHAVERFL REGDAISFSA DPNLQAKKES NLQLDSLRIF NSGDKLLEKV WSANFSGVSG PVQFTLDRDL VHPAYDILNI
401: GGTGLRTIGY WSNSSGLSVV APESLSSSAL DSSVNNVELH SVIWPGQTSE KPRGWVFSYH GKPMRIGVPL RTSYKEFVMQ DNGPDGVKGF AVDVFKAAIS
501: LLPYPVSCKF VLFGDGLKNP SYSELVQKVS ENYFDAAVGD IAIVTNRTRL VDFTQPYIES GLIIVAPARV VESNAWAFLK PFTFRMWCVL VVIFLFVGAV
601: VWILEHRTNT EFRGPPRQQI MTVCWFSFST MFFAHRENTV SALGRFVLLI WLFAVLIINS SYTANLTSLL TVQELTSGIQ GLDSLISSSS AIGYQVGSFS
701: RNYLVDELNI AESRLVPLNS PSDYARALEL GSGNGGVAAI IDELPYVEIF LSKYCKFKTV GQVFTKSGWG FAFPRDSPLA EDLSTAILAL SENGNLQRIH
801: DEWLSATECS ADNNGAASNS LSLSSFWGLF LICGLACLVA LVIFFLRIFC QYSRYSNQVE AQFPEPQQIL NRPARLTTIK SLISFVDKKE EEVKNALKKR
901: PNGSQHPSIG STEEQSTLPP TSIA

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.