Factsheet for Zm00001d006508_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006508_P003
Zm00001d014451_P001
Zm00001d014456_P001
Zm00001d014458_P001
Zm00001d018614_P003
Zm00001d018615_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	Zm00001d006508_P003	AT1G05200.1	23590882
AT1G05200.1	Zm00001d014451_P001	AT1G05200.1	23590882
AT1G05200.1	Zm00001d014456_P001	AT1G05200.1	23590882
AT1G05200.1	Zm00001d014458_P001	AT1G05200.1	23590882
AT1G05200.1	Zm00001d018614_P003	AT1G05200.1	23590882
AT1G05200.1	Zm00001d018615_P001	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97313	Sorghum	plasma membrane	93.17	93.07
HORVU2Hr1G045730.6	Barley	plasma membrane	80.5	80.24
TraesCS2D01G226400.1	Wheat	plasma membrane	80.06	79.81
TraesCS2A01G220700.1	Wheat	plasma membrane	79.85	79.42
TraesCS2B01G246200.1	Wheat	plasma membrane	77.03	79.35
GSMUA_Achr9P11690_001	Banana	plasma membrane	63.38	65.51
GSMUA_Achr9P02750_001	Banana	plasma membrane	63.49	63.9
GSMUA_Achr6P00460_001	Banana	plasma membrane	60.89	60.76
VIT_12s0059g02270.t01	Wine grape	plasma membrane	59.05	58.98
Solyc05g045650.2.1	Tomato	plasma membrane	55.9	58.84
CDY06165	Canola	plasma membrane	53.3	56.49
Zm00001d014458_P001	Maize	plasma membrane	56.23	56.41
Solyc07g052400.2.1	Tomato	cytosol	49.51	56.35
KRH56121	Soybean	plasma membrane	56.66	56.3
PGSC0003DMT400013497	Potato	plasma membrane	57.85	56.27
KRH22559	Soybean	plasma membrane	57.64	56.18
KRH25388	Soybean	plasma membrane	56.23	56.17
KRH26793	Soybean	plasma membrane	57.53	56.07
Zm00001d014451_P001	Maize	plasma membrane	57.2	55.76
PGSC0003DMT400065539	Potato	plasma membrane	56.45	55.37
Zm00001d018614_P003	Maize	plastid	56.77	54.64
CDY10044	Canola	plasma membrane	55.58	54.63
Zm00001d014456_P001	Maize	plasma membrane	54.6	54.49
Bra015398.1-P	Field mustard	plasma membrane	55.15	53.52
AT1G05200.1	Thale cress	plasma membrane	55.58	53.49
CDY49512	Canola	plasma membrane	55.04	53.31
CDY46839	Canola	plasma membrane	54.82	53.21
Zm00001d018615_P001	Maize	plasma membrane	55.15	53.02
Bra032480.1-P	Field mustard	plasma membrane	55.15	52.97
AT2G32390.5	Thale cress	plasma membrane	53.09	51.42
Bra005589.1-P	Field mustard	plasma membrane	52.0	50.79
Zm00001d002532_P003	Maize	plasma membrane	51.14	50.7
Zm00001d015007_P003	Maize	plasma membrane	49.4	50.61
Zm00001d054016_P004	Maize	plasma membrane	49.4	47.95
CDY48271	Canola	plastid	37.49	46.82
CDY66698	Canola	plasma membrane	44.75	46.46
Zm00001d033769_P001	Maize	golgi, plasma membrane	31.74	46.43
CDX84735	Canola	plasma membrane	44.1	45.83
CDY12211	Canola	plasma membrane	41.06	42.63
Zm00001d005782_P001	Maize	plasma membrane	32.5	30.61
Zm00001d005783_P002	Maize	plasma membrane	31.42	29.74
Zm00001d020568_P001	Maize	golgi	30.66	29.45
Zm00001d018332_P001	Maize	plastid	31.31	29.02
Zm00001d018329_P001	Maize	plasma membrane	30.88	28.5
Zm00001d052064_P001	Maize	mitochondrion, plasma membrane	30.77	27.93
Zm00001d020563_P001	Maize	plasma membrane	28.17	27.31

Protein Annotations

Gene3D:1.10.287.70	EntrezGene:103647716	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	UniProt:A0A1D6EXB6
InterPro:ANF_lig-bd_rcpt	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln
ProteinID:ONM24115.1	ProteinID:ONM24116.1	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090
PRINTS:PR01176	PANTHER:PTHR43891	PANTHER:PTHR43891:SF12	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822
SUPFAM:SSF53850	SignalP:SignalP-TM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI0002217F43	EnsemblPlantsGene:Zm00001d006508
EnsemblPlants:Zm00001d006508_P003	EnsemblPlants:Zm00001d006508_T003	SEG:seg	:	:	:

Description

Glutamate receptor 3.4

Coordinates

chr2:+:210172959..210177759

Molecular Weight (calculated)

100752.0 Da

IEP (calculated)

6.277

GRAVY (calculated)

0.150

Length

923 amino acids

Sequence
(BLAST)

001: MGSAHFAALL LCACLFVSGT VAADQNGNLT RPAEVRIGAL FTFGSVIGMA VRPAIELAVA DVNADPSLLW GTKLSVLMQD TNCSGFVGTI EALQLLAKDV
101: VAVLGPQSSA VAHVISHAVN ELHVPLISFA ATDPTLSSLE YPYFVRATQS DYYQMGAIAA IISQYEWKQV IAIYVDDDYG RGGITALGDA LAKRKCKISY
201: KAKLPPGAAK TTIEDILMQV NDMESRVYVI HVNPDSGLNV FSAAKSLGMM SSGYVWIATD WLSAVIDSSV HGIPDVMELT QGVLVLRQHI ADSDIQHAFL
301: SKWNNLTRNG SSYFMHAYDS VWLVAHAVER FLREGNAMSF SADPKLQAKK GSSLQLDSLR IFNSGDKLLE KVWSANFSGV SGPVQFTLDR DLVHPAYDIL
401: NIGGTGLRTI GYWSNSSGLS AVAPENLSSS ARDSSANNVQ LRGVIWPGQT SEKPRGWVFS HHGMPMRIGV PLRTSYKEFV MQDDGPDGVK GFAVDVFKAA
501: ISLLPYPVSC KFVLFGDGLK NPSYSELVQK VSENYFDAAV GDIAIVTNRT RLVDFTQPYI ESGLIIVAPA RVIESNAWAF LKPFTFQMWC VLVVIFLFVG
601: AVVWILEHRS NTEFRGPPSQ QIMTVCWFSF STMFFAHREN TVSALGRFVL LIWLFAVLII NSSYTANLTS LLTVQELTSG IQGLDSLISS SSAIGYQVGS
701: FSRNYLVDEL SIAESRLVAL NSPSDYARAL ELGSGNGGVA AIIDELPYVE IFLSKYCKFK TVGQVFTKSG WGFAFPRDSP LAEDLSTAIL ALSENGKLQK
801: MHDEWLSGTE CSADNGAGPS NSLSLSSFWG LFLICGLACF LALVIFFLRI FCQYSRYSNQ VEAQFAEPRV LNRPARLTTI KSLISFVDKK EEEVKNALKK
901: RPNGTGQQHP STPNAEEQPT LPP

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.