Factsheet for Zm00001d018614_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006508_P003
Zm00001d014451_P001
Zm00001d014456_P001
Zm00001d014458_P001
Zm00001d018614_P003
Zm00001d018615_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05200.1	Zm00001d006508_P003	AT1G05200.1	23590882
AT1G05200.1	Zm00001d014451_P001	AT1G05200.1	23590882
AT1G05200.1	Zm00001d014456_P001	AT1G05200.1	23590882
AT1G05200.1	Zm00001d014458_P001	AT1G05200.1	23590882
AT1G05200.1	Zm00001d018614_P003	AT1G05200.1	23590882
AT1G05200.1	Zm00001d018615_P001	AT1G05200.1	23590882

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95720	Sorghum	plastid	91.14	89.83
Zm00001d018615_P001	Maize	plasma membrane	76.96	76.88
TraesCS2D01G265700.1	Wheat	plasma membrane	72.47	75.05
TraesCS2A01G257200.1	Wheat	plasma membrane	72.68	75.03
TraesCS2B01G285400.1	Wheat	plasma membrane	72.47	74.89
Os07t0103100-01	Rice	plasma membrane	69.86	70.08
Solyc05g045650.2.1	Tomato	plasma membrane	54.54	59.64
Solyc07g052400.2.1	Tomato	cytosol	49.43	58.45
PGSC0003DMT400065539	Potato	plasma membrane	56.0	57.07
Zm00001d006508_P003	Maize	plasma membrane	54.64	56.77
KRH25388	Soybean	plasma membrane	54.64	56.71
PGSC0003DMT400013497	Potato	plasma membrane	56.1	56.69
VIT_12s0059g02270.t01	Wine grape	plasma membrane	54.54	56.6
KRH56121	Soybean	plasma membrane	54.64	56.4
CDY06165	Canola	plasma membrane	50.99	56.14
Zm00001d014458_P001	Maize	plasma membrane	53.81	56.09
KRH26793	Soybean	plasma membrane	55.37	56.07
Zm00001d014451_P001	Maize	plasma membrane	55.27	55.97
Zm00001d014456_P001	Maize	plasma membrane	53.49	55.46
KRH22559	Soybean	plasma membrane	54.74	55.44
CDY10044	Canola	plasma membrane	53.18	54.31
Bra015398.1-P	Field mustard	plasma membrane	53.7	54.15
CDY49512	Canola	plasma membrane	53.7	54.04
CDY46839	Canola	plasma membrane	53.39	53.84
Bra032480.1-P	Field mustard	plasma membrane	52.66	52.55
AT1G05200.1	Thale cress	plasma membrane	52.45	52.45
Zm00001d002532_P003	Maize	plasma membrane	50.78	52.31
Zm00001d015007_P003	Maize	plasma membrane	48.49	51.61
Bra005589.1-P	Field mustard	plasma membrane	50.78	51.53
AT2G32390.5	Thale cress	plasma membrane	51.2	51.52
Zm00001d054016_P004	Maize	plasma membrane	48.59	49.0
Zm00001d033769_P001	Maize	golgi, plasma membrane	31.28	47.54
CDY66698	Canola	plasma membrane	43.48	46.91
CDX84735	Canola	plasma membrane	42.54	45.95
CDY48271	Canola	plastid	35.04	45.47
CDY12211	Canola	plasma membrane	39.83	42.97
Zm00001d005782_P001	Maize	plasma membrane	32.74	32.04
Zm00001d018332_P001	Maize	plastid	32.74	31.53
Zm00001d018329_P001	Maize	plasma membrane	31.28	30.0
Zm00001d052064_P001	Maize	mitochondrion, plasma membrane	31.6	29.79
Zm00001d020568_P001	Maize	golgi	28.47	28.41
Zm00001d005783_P002	Maize	plasma membrane	28.78	28.31
Zm00001d020563_P001	Maize	plasma membrane	27.84	28.05

Protein Annotations

Gene3D:1.10.287.70	EntrezGene:103631863	MapMan:24.3.9	Gene3D:3.40.190.10	Gene3D:3.40.50.2300	UniProt:A0A1D6HQP8
InterPro:ANF_lig-bd_rcpt	GO:GO:0003674	GO:GO:0004871	GO:GO:0004970	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0035235	GO:GO:0038023	InterPro:Iontro_rcpt	InterPro:Iontropic_Glu_rcpt_pln
ProteinID:ONM50886.1	PFAM:PF00060	PFAM:PF00497	PFAM:PF01094	PIRSF:PIRSF037090	PRINTS:PR01176
PANTHER:PTHR43891	PANTHER:PTHR43891:SF7	InterPro:Peripla_BP_I	SMART:SM00079	SUPFAM:SSF53822	SUPFAM:SSF53850
SignalP:SignalP-noTM	InterPro:Solute-binding_3/MltF_N	TMHMM:TMhelix	UniParc:UPI000221B70B	EnsemblPlantsGene:Zm00001d018614	EnsemblPlants:Zm00001d018614_P003
EnsemblPlants:Zm00001d018614_T003	SEG:seg	:	:	:	:

Description

Glutamate receptor 3.4

Coordinates

chr7:+:908438..912556

Molecular Weight (calculated)

103577.0 Da

IEP (calculated)

7.725

GRAVY (calculated)

0.098

Length

959 amino acids

Sequence
(BLAST)

001: MASPLSSSSS STSTSTSTLL RLICLCTALP VALQAAAARP PNVTVGALFT FDSVIGRSAR TAIQLAVDDV NRDPAVLRDT NLSVIFQDTK CSGFVGTIQA
101: LELMERHVVA VVGPQSSGIA HVVSHVANQL RVPLLSFAAT DPALASSQYP YFVRATHDDR FQMAAVADVV AHHGWREVTA VYVDNDYGRG GVVALGDALE
201: ALRARVSYRA AFPPGADRAA LADLLVRANM MESRVFVVHA SPDSGLDVFA AARSLDMMAT GYVWIATDWL AAAIDAAGAG AAAAAGNIQG VLMLRQYTPD
301: SDAKASLVSR FAAKQYINAY GLFAYDSVWM AARAIDQFLD DNASGGNVSF SADRNIRDAN GSALGLSALR VFDQGEQLLR KVMLANFTGV TGSVRFQLDA
401: DGSGGATLIN PAYEILNVGG TGVRRVAYWS NYTRLSVEAP RLLADGGPPP NSNNTTTQQQ QQMYSVIWPG DTTAKPRGWV FPNNGKPLRI GVPYRTTYKQ
501: FVSKDRSSPD GVSGYCVDVF NAAVALLPYP VPASFVLFGD GVKNPSYNDL VQRVADGFFD AAVGDISIVT NRTRVVDFTQ PYVESGLVIV STVKAKNSNE
601: WAFLKPFTPG MWAIIGAFFL FVGAVVWILE HRFNPEFRGS PRRQMVTIFW FSFSTMFFAH RENTVSTLGR FVLIIWLFVV LIINSSYTAS LTSILTVQQL
701: STGIQGLDSL LSSNDPIGYQ VGSFARSYMM DELGVPASRL RELAIDGYAG SLQRGPSNGG VAAIVDELPY VELFLSTNCQ FRTVGQEFTK SGWGFAFQRD
801: SPLAVDLSTA ILTLSENGDL QRIHDKWLSP GTCASQSTDG VGADRLNLGS FWGLFLICGV ACFVALLIYF ARILCQFCKY HGHGTTDGAG PFPVPERSLR
901: RPARLTSIRD LMSFVDMKEA EVKRAIRSRS DRRLDGSMGG RSYTSEGPSL SRPSSMSPV

Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)

001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT

Arabidopsis Description

GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.