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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 6
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os06t0680500-01
Os07t0103100-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G05200.1 Os06t0680500-01 AT1G05200.1 23590882
AT1G05200.1 Os07t0103100-01 AT1G05200.1 23590882
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G265700.1 Wheat plasma membrane 70.19 72.46
TraesCS2B01G285400.1 Wheat plasma membrane 70.29 72.41
TraesCS2A01G257200.1 Wheat plasma membrane 69.98 72.01
Zm00001d018614_P003 Maize plastid 70.08 69.86
EER95720 Sorghum plastid 70.71 69.48
Zm00001d018615_P001 Maize plasma membrane 63.18 62.92
Solyc05g045650.2.1 Tomato plasma membrane 54.39 59.29
Solyc07g052400.2.1 Tomato cytosol 50.1 59.06
EER95721 Sorghum plastid 59.0 57.49
PGSC0003DMT400065539 Potato plasma membrane 55.65 56.54
VIT_12s0059g02270.t01 Wine grape plasma membrane 54.18 56.06
PGSC0003DMT400013497 Potato plasma membrane 55.65 56.06
KRH25388 Soybean plasma membrane 53.97 55.84
Os06t0680500-01 Rice cytosol, plasma membrane 51.67 55.51
KRH56121 Soybean plasma membrane 53.77 55.33
CDY06165 Canola plasma membrane 50.21 55.11
CDY10044 Canola plasma membrane 52.62 53.57
KRH26793 Soybean plasma membrane 52.93 53.43
Bra015398.1-P Field mustard plasma membrane 53.03 53.31
KRH22559 Soybean plasma membrane 52.72 53.22
CDY49512 Canola plasma membrane 52.93 53.1
CDY46839 Canola plasma membrane 52.72 53.0
AT1G05200.1 Thale cress plasma membrane 51.99 51.82
Bra032480.1-P Field mustard plasma membrane 51.99 51.72
Bra005589.1-P Field mustard plasma membrane 50.84 51.43
AT2G32390.5 Thale cress plasma membrane 51.26 51.42
Os02t0117500-01 Rice plasma membrane 48.22 48.83
Os04t0585200-02 Rice extracellular 26.26 46.48
CDY48271 Canola plastid 35.56 46.01
CDY66698 Canola plasma membrane 42.47 45.67
CDX84735 Canola plasma membrane 42.36 45.61
CDY12211 Canola plasma membrane 40.17 43.19
Os02t0787600-01 Rice golgi 33.47 32.39
Os06t0190800-01 Rice cytosol, plasma membrane 27.51 32.07
Os09t0428300-00 Rice plasma membrane 29.08 31.88
Os09t0431100-01 Rice plasma membrane 30.65 30.68
Os09t0429000-00 Rice plasma membrane 29.71 30.44
Os09t0429400-00 Rice golgi 29.71 30.41
Os09t0429500-00 Rice plasma membrane 29.6 29.92
Os09t0431200-01 Rice endoplasmic reticulum, extracellular 28.77 28.95
Os09t0428600-00 Rice plasma membrane 15.59 27.54
Os09t0429200-00 Rice plasma membrane 26.99 27.22
Os09t0428750-01 Rice mitochondrion 0.21 1.65
Os02t0117600-01 Rice plastid 0.1 0.41
Protein Annotations
Gene3D:1.10.287.70MapMan:24.3.9Gene3D:3.40.190.10Gene3D:3.40.50.2300EntrezGene:4342180InterPro:ANF_lig-bd_rcpt
ProteinID:BAF20601.1ProteinID:BAS99694.1ProteinID:EAZ38406.1GO:GO:0003674GO:GO:0004871GO:GO:0004970
GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006811GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0035235GO:GO:0038023
InterPro:Iontro_rcptInterPro:Iontropic_Glu_rcpt_plnEnsemblPlantsGene:Os07g0103100EnsemblPlants:Os07t0103100-01PFAM:PF00060PFAM:PF00497
PFAM:PF01094PIRSF:PIRSF037090PRINTS:PR01176PANTHER:PTHR43891PANTHER:PTHR43891:SF7InterPro:Peripla_BP_I
UniProt:Q0D972SMART:SM00079SUPFAM:SSF53822SUPFAM:SSF53850SignalP:SignalP-noTMInterPro:Solute-binding_3/MltF_N
TMHMM:TMhelixUniParc:UPI0000E12986RefSeq:XP_015646997.1SEG:seg::
Description
Glutamate receptor homolog 3.6, GLUTAMATE RECEPTOR-LIKE 3.4Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2. (Os07t0103100-01)
Coordinates
chr7:+:191053..196429
Molecular Weight (calculated)
104447.0 Da
IEP (calculated)
6.638
GRAVY (calculated)
0.035
Length
956 amino acids
Sequence
(BLAST)
001: MAGDQLLRRL LFLLWVVALA VPGLAARPAN VSIGALFTFD SVIGRAAKVA IELAVADVNR DDGVLNGTYL SVVEQDTKCS GFIGIIQGLQ VMEKKVVAVV
101: GPQSSGIGHV VSHVADELRI PLVSFAATDP TLGSSQYPYF LRATHSDFFQ MAAVADIISH YAWREATLIY VDNDYGRAAL DALGDHLQSM RSKVSYRAPL
201: PPAADRAAIT DLLLRVSMME SRVIVVHANP DSGLDIFAAA QSLGMMSSGY VWIATEWLAA LLDSDSSPPR KTTALALLQG VVTLRQYTPD SDAKRSLMSR
301: FAARLQAHNT TGGINAYVLF AYDAVWMAAR AVDQLLVDGS NVSFSDDARL RAENETGSAL RLGALKVFDQ GEQLLSKMKT LNFTGVTGQV RFGDDRNLAD
401: PAYEVLNVGG TGVRRVGYWS NRTRLSVTAP EQEQNGKKKK QQGEELYSVI WPGETASTPR GWVFPNNGKA LRIGVPYRTT YKQFVSKDAG GPDGASGYCI
501: DVFKAAVALL AYPVPVSYVV VGDGVKNPSY GELVQRVAEG ELDAAVGDIS IVTNRTRVVD FTQPYVESGL VIVTAVRERA SSAWAFLKPF TREMWAVTGG
601: FFLFVGAVVW VLEHRSNTDF RGSPRKQLVT VFWFSFSTMF FAHRENTVST LGRLVLIIWL FVVLIINSSY TASLTSILTV QQLSTGIQGL DGLIASSDPI
701: GFQVGSFAKS YLMQELGVPE SRLRELAITD YASSLQTGVV AAIVDELPYV ELFLSTNCQF RTVGQEFTKS GWGFAFQRDS PLAVDLSTAI LTLSENGDLQ
801: RIHDKWLSPG QCASQGTDVG ADRLNLSSFW GLFLICGVAC FIALLIFFFR TLRQYFRYHG HADIDDDDDS ENKATPFPVD GGERMSSRRP ARLASIRDLM
901: TFVDMKEAEV KRRKKMMNED SSSCGRRLDM DSHSHRSMPT SANANAAPPS SSFSSV
Best Arabidopsis Sequence Match ( AT1G05200.1 )
(BLAST)
001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT
Arabidopsis Description
GLR3.4Glutamate receptor [Source:UniProtKB/TrEMBL;Acc:Q53YX3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.